CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0258900

Gene name
Homology with Arabidopsis Similar to At5g38760: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.46

%ile 58.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.94 Os11g0258900 AK102638.1 - Conserved hypothetical protein 9e-1 At5g38760 unknown protein O.I. H.G. S.X.
0.50 68.0 0.95 Os01g0210100 NM_197507.1 - - 2e+0 At5g38760 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein O.I. H.G. S.X.
0.36 44.0 0.95 Os08g0158800 AK107200.1 - Hypothetical protein 2e-1 At1g44191 - O.I. H.G. S.X.
0.29 31.1 0.94 Os11g0307600 AK070683.1 - Conserved hypothetical protein 2e-2 At2g44390 DC1 domain-containing protein O.I. H.G. S.X.
0.20 16.5 0.94 Os03g0158700 AK071242.1 - - 9e+0 At4g24060 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.94	Os11g0258900	AK102638.1	-	Conserved hypothetical protein	9e-1	At5g38760	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.95	Os01g0210100	NM_197507.1	-	-	2e+0	At5g38760	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os01g0840900	AK063699.1	-	Hypothetical protein	2e-1	At1g71090	auxin efflux carrier family protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os08g0158800	AK107200.1	-	Hypothetical protein	2e-1	At1g44191	-	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os11g0307600	AK070683.1	-	Conserved hypothetical protein	2e-2	At2g44390	DC1 domain-containing protein	O.I.	H.G.	S.X.
0.20	16.5	0.94	Os03g0158700	AK071242.1	-	-	9e+0	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.6 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.6	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.1	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.0	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9	97.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g38760, orthologous to the query gene, Os11g0258900

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.78 88.6 At5g38760 833867 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF O.I. H.G. S.X.
0.89 94.6 At1g69940 843331 PPME1 Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers. O.I. H.G. S.X.
0.89 94.6 At3g07850 819976 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA O.I. H.G. S.X.
0.88 94.0 At3g28810 822513 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMBFPVA O.I. H.G. S.X.
0.85 92.4 At1g61563 842451 RALFL8 (ralf-like 8) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. H.G. S.X.
0.85 92.4 At3g28830 822515 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA O.I. H.G. S.X.
0.83 91.4 At1g02790 839391 PGA4 (POLYGALACTURONASE 4) encodes a exopolygalacturonase. O.I. H.G. S.X.
0.83 91.4 At3g20865 821635 AGP40 (arabinogalactan-protein 40) Encodes a putative arabinogalactan-protein (AGP40). O.I. H.G. S.X.
0.83 91.4 At5g45880 834628 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. H.G. S.X.
0.82 90.9 At5g61720 836294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. H.G. S.X.
0.81 90.4 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. H.G. S.X.
0.80 89.8 At3g57690 824938 AGP23 (ARABINOGALACTAN-PROTEIN 23) Encodes a putative arabinogalactan-protein (AGP23). O.I. H.G. S.X.
0.79 89.1 At1g55570 842006 sks12 (SKU5 Similar 12) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. H.G. S.X.
0.79 89.1 At3g01270 821142 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. H.G. S.X.
0.79 89.1 At2g47030 819317 VGDH1 F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. H.G. S.X.
0.79 89.1 At3g13400 820540 sks13 (SKU5 Similar 13) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. H.G. S.X.
0.78 88.6 At2g47050 819319 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.78 88.6 At3g28750 822507 unknown protein F:unknown;P:unknown;C:endomembrane system;PO O.I. H.G. S.X.
0.78 88.6 At4g13560 826989 UNE15 (unfertilized embryo sac 15) F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFO O.I. H.G. S.X.
0.78 88.6 At5g14380 831289 AGP6 (Arabinogalactan proteins 6) Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth. O.I. H.G. S.X.
0.77 88.0 At5g52360 835312 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) F:actin binding;P:biological_process unknown;C:intracellular;MPOF O.I. H.G. S.X.
0.77 88.0 At5g19580 832078 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO O.I. H.G. S.X.
0.76 87.4 At3g07820 819973 polygalacturonase 3 (PGA3) / pectinase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. H.G. S.X.
0.72 84.8 At3g01240 821219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. H.G. S.X.
0.71 84.2 At1g28270 839721 RALFL4 (ralf-like 4) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. H.G. S.X.
0.71 84.2 At1g29140 839788 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.69 82.9 At4g35010 829653 BGAL11 (beta-galactosidase 11) putative beta-galactosidase (BGAL11 gene) O.I. H.G. S.X.
0.66 80.1 At5g51030 835176 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.58 73.8 At3g13390 820539 sks11 (SKU5 Similar 11) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. H.G. S.X.
0.50 65.3 At3g01700 821093 AGP11 Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth. O.I. H.G. S.X.
0.45 58.3 At4g25590 828664 ADF7 (actin depolymerizing factor 7) F:actin binding;P:biological_process unknown;C:intracellular;MPOF O.I. H.G. S.X.
0.37 45.0 At5g59370 836056 ACT4 (ACTIN 4) Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen. O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.78	88.6	At5g38760	833867	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PF	O.I.	H.G.	S.X.
0.89	94.6	At1g69940	843331	PPME1	Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.	O.I.	H.G.	S.X.
0.89	94.6	At3g07850	819976	exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA	O.I.	H.G.	S.X.
0.88	94.0	At3g28810	822513	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMBFPVA	O.I.	H.G.	S.X.
0.85	92.4	At1g61563	842451	RALFL8 (ralf-like 8)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	H.G.	S.X.
0.85	92.4	At3g28830	822515	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA	O.I.	H.G.	S.X.
0.83	91.4	At1g02790	839391	PGA4 (POLYGALACTURONASE 4)	encodes a exopolygalacturonase.	O.I.	H.G.	S.X.
0.83	91.4	At3g20865	821635	AGP40 (arabinogalactan-protein 40)	Encodes a putative arabinogalactan-protein (AGP40).	O.I.	H.G.	S.X.
0.83	91.4	At5g45880	834628	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	H.G.	S.X.
0.82	90.9	At5g61720	836294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	H.G.	S.X.
0.81	90.4	At3g62170	825390	VGDH2 (Vanguard 1 homolog 2)	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	H.G.	S.X.
0.80	89.8	At3g57690	824938	AGP23 (ARABINOGALACTAN-PROTEIN 23)	Encodes a putative arabinogalactan-protein (AGP23).	O.I.	H.G.	S.X.
0.79	89.1	At1g55570	842006	sks12 (SKU5 Similar 12)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	H.G.	S.X.
0.79	89.1	At3g01270	821142	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	H.G.	S.X.
0.79	89.1	At2g47030	819317	VGDH1	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	H.G.	S.X.
0.79	89.1	At3g13400	820540	sks13 (SKU5 Similar 13)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	H.G.	S.X.
0.78	88.6	At2g47050	819319	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.78	88.6	At3g28750	822507	unknown protein	F:unknown;P:unknown;C:endomembrane system;PO	O.I.	H.G.	S.X.
0.78	88.6	At4g13560	826989	UNE15 (unfertilized embryo sac 15)	F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFO	O.I.	H.G.	S.X.
0.78	88.6	At5g14380	831289	AGP6 (Arabinogalactan proteins 6)	Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.	O.I.	H.G.	S.X.
0.77	88.0	At5g52360	835312	ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	O.I.	H.G.	S.X.
0.77	88.0	At5g19580	832078	glyoxal oxidase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO	O.I.	H.G.	S.X.
0.76	87.4	At3g07820	819973	polygalacturonase 3 (PGA3) / pectinase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	H.G.	S.X.
0.72	84.8	At3g01240	821219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	H.G.	S.X.
0.71	84.2	At1g28270	839721	RALFL4 (ralf-like 4)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	H.G.	S.X.
0.71	84.2	At1g29140	839788	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.69	82.9	At4g35010	829653	BGAL11 (beta-galactosidase 11)	putative beta-galactosidase (BGAL11 gene)	O.I.	H.G.	S.X.
0.66	80.1	At5g51030	835176	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.58	73.8	At3g13390	820539	sks11 (SKU5 Similar 11)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	H.G.	S.X.
0.50	65.3	At3g01700	821093	AGP11	Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.	O.I.	H.G.	S.X.
0.45	58.3	At4g25590	828664	ADF7 (actin depolymerizing factor 7)	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	O.I.	H.G.	S.X.
0.37	45.0	At5g59370	836056	ACT4 (ACTIN 4)	Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os11g0258900
Gene name
Homology with Arabidopsis	Similar to At5g38760: unknown protein (HF=9e-1)
Module size	6 genes
NF	0.46
%ile	58.3

Co-expression analysis

Gene ID Os11g0258900 Gene name Homology with ArabidopsisSimilar to At5g38760: unknown protein (HF=9e-1) Module size 6 genes NF 0.46 %ile 58.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os11g0258900

Gene name
Homology with Arabidopsis Similar to At5g38760: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.46

%ile 58.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays