CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0235500

Gene name
Homology with Arabidopsis Similar to At1g64840: F-box family protein (HF=2e+0)

Module size 7 genes

NF 0.62

%ile 84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.82 Os11g0235500 9639.m01223 - Herbicide safener binding protein 2e+0 At1g64840 F-box family protein O.I. H.G. S.X.
0.77 93.1 0.86 Os03g0306700 AK109929.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.
0.67 87.2 0.86 Os11g0126800 AK059453.1 - Hypothetical protein 9e-2 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.59 78.0 0.86 Os06g0500700 9634.m02934 - Cytochrome P450 family protein 1e-2 At3g26300 CYP71B34 O.I. H.G. S.X.
0.57 77.0 0.84 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein O.I. H.G. S.X.
0.53 71.3 0.85 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.50 68.0 0.84 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.8 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM262008 IAC165, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.2 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.7 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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