CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0224300

Gene name
Homology with Arabidopsis Similar to At3g02180: SP1L3 (SPIRAL 1-LIKE3) (HF=6e+0)

Module size 6 genes

NF 0.13

%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os11g0224300 AK106705.1 - Integrase, catalytic region domain containingprotein 6e+0 At3g02180 SP1L3 (SPIRAL 1-LIKE3) O.I. H.G. S.X.
0.20 16.5 0.97 Os04g0474600 9632.m03783 - Beta-primeverosidase (EC 3.2.1.149) 5e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) O.I. H.G. S.X.
0.13 8.2 0.98 Os04g0688600 AK070680.1 - Anionic peroxidase precursor 3e-1 At5g40150 peroxidase, putative O.I. H.G. S.X.
0.11 6.5 0.98 Os05g0372000 AK100218.1 - Conserved hypothetical protein 8e-2 At5g16510 reversibly glycosylated polypeptide, putative O.I. H.G. S.X.
0.09 4.9 0.98 Os12g0228400 AK120234.1 - Chaperonin CPN60-1, mitochondrial precursor(HSP60-1) 3e-2 At3g23990 HSP60 (HEAT SHOCK PROTEIN 60) O.I. H.G. S.X.
0.04 2.0 0.98 Os01g0301700 AK100563.1 - TPR-like domain containing protein 5e+0 At5g02780 In2-1 protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage