CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0186200

Gene name
Homology with Arabidopsis Similar to At1g01520: myb family transcription factor (HF=1e+0)

Module size 7 genes

NF 0.31

%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.93 Os11g0186200 BI806335 - Aldehyde dehydrogenase (EC 1.2.1.3) 1e+0 At1g01520 myb family transcription factor O.I. H.G. S.X.
0.55 73.7 0.93 Os01g0803200 AK121632.1 - Cysteine proteinase inhibitor-I (Oryzacystatin-I) 1e+0 At2g40880 ATCYSA (CYSTATIN A) O.I. H.G. S.X.
0.43 55.4 0.93 Os02g0817700 AY224469.1 - Acetyl-CoA acyltransferase (3-ketoacyl-coathiolase) (EC 2.3.1.16) 5e-9 At1g04710 PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) O.I. H.G. S.X.
0.42 53.9 0.92 Os05g0545000 AK066240.1 - Phosphatidylinositol transfer-like protein IV 5e-9 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative O.I. H.G. S.X.
0.31 34.5 0.93 Os12g0623500 CB629004 - Cationic amino acid transporter-like protein 3e-17 At1g58030 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) O.I. H.G. S.X.
0.27 27.5 0.94 Os02g0293500 CB645264 - CLP protease regulatory subunit CLPX precursor 1e-33 At5g53350 CLPX O.I. H.G. S.X.
0.10 5.7 0.93 Os05g0310500 AK101093.1 - Cathepsin B (Fragment) 1e-33 At1g02300 cathepsin B-like cysteine protease, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.5 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.057 1 GO:0006260 The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
0.029 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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