CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0163800

Gene name
Homology with Arabidopsis Similar to At4g08380: proline-rich extensin-like family protein (HF=9e-1)

Module size 6 genes

NF 0.66

%ile 88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.91 Os11g0163800 AK105532.1 - Protein of unknown function DUF793 family protein 9e-1 At4g08380 proline-rich extensin-like family protein O.I. H.G. S.X.
0.71 89.6 0.89 Os02g0653900 AK104793.1 - - 6e-2 At4g16820 lipase class 3 family protein O.I. H.G. S.X.
0.61 81.2 0.91 Os05g0127300 AK106429.1 - Cytokinin-regulated kinase 1 2e-2 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) O.I. H.G. S.X.
0.60 79.7 0.91 Os03g0334200 AK066472.1 - Hypothetical protein 8e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.57 77.0 0.92 Os02g0314600 AK068924.1 - Peptidase A1, pepsin family protein 1e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.36 44.0 0.90 Os03g0767000 AB116527.1 - Allene oxide synthase (EC 4.2.1.92) 1e+0 At3g03550 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.4 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.044 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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