Co-expression analysis

Gene ID Os11g0152500
Gene name
Homology with ArabidopsisSimilar to At2g27550: ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) (HF=1e-16)
Module size 30 genes
NF 0.27
%ile 26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.40.74Os11g0152500AF159882.1-Phosphatidylethanolamine-binding protein familyprotein1e-16At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)O.I.H.G.S.X.
0.5269.60.81Os05g0399200AK101507.1-Endo-1,3;1,4-beta-D-glucanase precursor (EC3.2.1.-)2e-3At3g23600dienelactone hydrolase family proteinO.I.H.G.S.X.
0.4558.80.75Os03g0338000AK121399.1-Alanine:glyoxylate aminotransferase-like protein(Fragment)5e-9At3g08860alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putativeO.I.H.G.S.X.
0.3541.70.84Os06g0216700AK101397.1-Cupredoxin domain containing protein5e-1At2g46410CPC (CAPRICE)O.I.H.G.S.X.
0.3338.80.90Os04g0650900AK064480.1-Alpha-N-acetylglucosaminidase3e-14At5g13690alpha-N-acetylglucosaminidase family / NAGLU familyO.I.H.G.S.X.
0.3236.30.83Os04g0610900AK120898.1-EDR19e-5At4g24480serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.3134.50.90Os02g0809800AK063181.1--5e-1At2g34140Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3032.70.85Os04g0359100AK069384.1-Zinc-containing alcohol dehydrogenase superfamilyprotein2e+0At4g13010oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.3032.70.83Os03g0149300BU673570-Protein of unknown function DUF6 domain containingprotein2e+0At4g10595LCR2 (Low-molecular-weight cysteine-rich 2)O.I.H.G.S.X.
0.2931.10.86Os02g0139600AK107052.1-Dars-prov protein2e-3At4g26870aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putativeO.I.H.G.S.X.
0.2931.10.80Os11g0427700AK071806.1-Conserved hypothetical protein6e-2At5g50300xanthine/uracil/vitamin C permease family proteinO.I.H.G.S.X.
0.2831.10.86Os03g0722500AK099926.1-Glycoside hydrolase, family 17 protein1e-3At2g16230catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.2831.10.86Os04g0565900AK109094.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein2e-1At1g61660basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2831.10.85Os04g0637000AK066906.1-Basic leucine zipper protein (Liguleless2)4e-4At5g65210TGA1O.I.H.G.S.X.
0.2625.60.77Os10g0547500AK070040.1-Conserved hypothetical protein7e-5At1g02260transmembrane protein, putativeO.I.H.G.S.X.
0.2625.60.85Os12g0454800AY572461.1-Histidine kinase7e-3At5g10530lectin protein kinase, putativeO.I.H.G.S.X.
0.2625.60.88Os03g0597600AK069458.1-L-asparaginase (EC 3.5.1.1) (L-asparagineamidohydrolase)4e-2At5g08100L-asparaginase / L-asparagine amidohydrolaseO.I.H.G.S.X.
0.2422.40.85Os10g0390600AK107029.1-1-aminocyclopropane-1-carboxylate synthase familyprotein4e-7At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.2219.40.85Os05g0581900AK109090.1-Conserved hypothetical protein6e-4At4g26830catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.2219.40.85Os02g0648100AK111267.1-Protein kinase domain containing protein1e-2At3g13065SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)O.I.H.G.S.X.
0.2117.90.86Os09g0423400AK072133.1-Biopterin transport-related protein BT1 familyprotein3e-4At5g10820integral membrane transporter family proteinO.I.H.G.S.X.
0.2117.90.84Os07g0677600AK060984.1-Cationic peroxidase1e-2At5g39580peroxidase, putativeO.I.H.G.S.X.
0.2016.50.78Os02g0282900AK121560.1-RNase L inhibitor-like protein3e-14At4g19210ATRLI2O.I.H.G.S.X.
0.1915.10.89Os09g0474000AK108319.1-Basic-leucine zipper (bZIP) transcription factordomain containing protein2e+0At2g23290AtMYB70 (myb domain protein 70)O.I.H.G.S.X.
0.1611.30.84Os03g0321700AK101653.1-WRKY transcription factor 552e+0At4g29030glycine-rich proteinO.I.H.G.S.X.
0.149.30.86Os03g0859900AK072837.1-Protein of unknown function DUF547 domaincontaining protein7e-2At5g55508unknown proteinO.I.H.G.S.X.
0.149.30.87Os04g0577200AK101984.1-Rac GTPase activating protein 16e-14At2g46710rac GTPase activating protein, putativeO.I.H.G.S.X.
0.149.30.87Os01g0231800AK062918.1-Conserved hypothetical protein2e+0At3g16220-O.I.H.G.S.X.
0.073.70.87Os03g0235900AF140606.1-Nitrate transporter1e-3At2g02040PTR2 (PEPTIDE TRANSPORTER 2)O.I.H.G.S.X.
0.063.00.85Os10g0132300AK111282.1-Jacalin-related lectin domain containing protein7e+0At5g11840unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.199.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.198.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0611GO:0048510The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs.Link to AmiGO
0.0591GO:0006516The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.Link to AmiGO
0.0571GO:0006422The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage