CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0151200

Gene name
Homology with Arabidopsis Similar to At5g54370: late embryogenesis abundant protein-related / LEA protein-related (HF=2e-1)

Module size 11 genes

NF 0.61

%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.97 Os11g0151200 AK106826.1 - Conserved hypothetical protein 2e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related O.I. H.G. S.X.
0.75 91.9 0.98 Os01g0712300 9629.m04990 - - 1e+0 At2g04230 F-box family protein O.I. H.G. S.X.
0.67 87.2 0.98 Os12g0497500 9640.m03038 - - 1e+0 At4g00955 - O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0247300 9629.m01428 - - 4e+0 At5g53490 thylakoid lumenal 17.4 kDa protein, chloroplast O.I. H.G. S.X.
0.64 83.4 0.98 Os07g0682500 AK109592.1 - Hypothetical protein 6e-3 At3g63450 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.63 82.7 0.98 Os02g0544900 9630.m03240 - - 8e-1 At1g54060 ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1) O.I. H.G. S.X.
0.62 81.5 0.98 Os11g0637000 AK119762.1 - Sugar transporter protein 1e+1 Atmg00470 - O.I. H.G. S.X.
0.61 81.2 0.98 Os12g0603100 9640.m04015 - - 3e-1 At1g80580 ethylene-responsive element-binding family protein O.I. H.G. S.X.
0.56 76.3 0.98 Os04g0517600 9633.m01514 - - 1e+0 At1g16640 transcriptional factor B3 family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os03g0770100 AK108776.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At2g27710 60S acidic ribosomal protein P2 (RPP2B) O.I. H.G. S.X.
0.47 62.3 0.98 Os01g0216700 NM_188458.1 - Conserved hypothetical protein 5e-1 At4g20290 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.7 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.2 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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