CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0140400

Gene name
Homology with Arabidopsis Similar to At3g57330: ACA11 (autoinhibited Ca2+-ATPase 11) (HF=2e-24)

Module size 6 genes

NF 0.23

%ile 22.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.89 Os11g0140400 9640.m00336 - Calcium-translocating P-type ATPase, PMCA-typefamily protein 2e-24 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) O.I. H.G. S.X.
0.55 73.7 0.89 Os01g0236300 AK102521.1 - Auxin response factor 18 2e-2 At4g23980 ARF9 (AUXIN RESPONSE FACTOR 9) O.I. H.G. S.X.
0.50 68.0 0.90 Os06g0222400 AK063886.1 - Hypothetical protein 2e-3 At5g46780 VQ motif-containing protein O.I. H.G. S.X.
0.19 15.1 0.90 Os01g0897600 CA762923 - Glycoside hydrolase, family 1 protein 2e-7 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) O.I. H.G. S.X.
0.18 13.7 0.90 Os05g0120700 AK062874.1 - Cation transporting ATPase, C-terminal domaincontaining protein 2e-23 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) O.I. H.G. S.X.
0.07 3.7 0.89 Os01g0864700 AU172991 - Protein kinase domain containing protein 3e-51 At3g44200 NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.5 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig11449_at, orthologous to the query gene, Os11g0140400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 78.7 Contig11449_at At3g57330 - - 9e-29 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) O.I. H.G. S.X.
0.48 63.2 Contig10402_at At3g57330 - - 2e-1 At3g54780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.40 53.1 Contig3801_at At3g57330 - - 4e-26 At1g69840 band 7 family protein O.I. H.G. S.X.
0.35 45.1 Contig6881_at At3g57330 - - 3e+0 At4g15150 glycine-rich protein O.I. H.G. S.X.
0.35 45.1 Contig17249_at At3g57330 - - 3e-1 At2g05520 GRP-3 (GLYCINE-RICH PROTEIN 3) O.I. H.G. S.X.
0.35 45.1 rbaal40l24_s_at At3g57330 - - 2e+0 At1g31319 unknown protein O.I. H.G. S.X.
0.33 42.6 Contig3173_at At3g57330 - - 6e+0 At4g05091 unknown protein O.I. H.G. S.X.
0.32 40.3 Contig2935_s_at At3g57330 - - 3e-14 At4g27130 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.30 37.0 Contig13404_at At3g57330 - - 2e+0 At1g76750 unknown protein O.I. H.G. S.X.
0.29 35.5 Contig3802_at At3g57330 - - 3e-76 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial O.I. H.G. S.X.
0.25 28.9 Contig9995_at At3g57330 - - 7e-4 At2g22300 SR1 (SIGNAL RESPONSIVE 1) O.I. H.G. S.X.
0.24 27.2 HVSMEi0003H24r2_s_at At3g57330 - - 1e+1 At3g55490 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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