Co-expression analysis

Gene ID	Os11g0140400
Gene name
Homology with Arabidopsis	Similar to At3g57330: ACA11 (autoinhibited Ca2+-ATPase 11) (HF=2e-24)
Module size	6 genes
NF	0.23
%ile	22.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	78.0	0.89	Os11g0140400	9640.m00336	-	Calcium-translocating P-type ATPase, PMCA-typefamily protein	2e-24	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.89	Os01g0236300	AK102521.1	-	Auxin response factor 18	2e-2	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.90	Os06g0222400	AK063886.1	-	Hypothetical protein	2e-3	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.90	Os01g0897600	CA762923	-	Glycoside hydrolase, family 1 protein	2e-7	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	0.90	Os05g0120700	AK062874.1	-	Cation transporting ATPase, C-terminal domaincontaining protein	2e-23	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	0.89	Os01g0864700	AU172991	-	Protein kinase domain containing protein	3e-51	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.5	99.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.4	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.7	97.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1	97.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6344.1.S1_s_at, orthologous to the query gene, Os11g0140400

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	Gma.6344.1.S1_s_at	At3g57330	-	-	5e-63	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.5342.1.S1_at	At3g57330	-	-	6e-11	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.1951.1.S1_at	At3g57330	-	-	4e-63	At3g22425	IGPD	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.11325.1.S1_at	At3g57330	-	-	2e-53	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.86632.1.S1_at	At3g57330	-	-	9e-2	At5g53045	-	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.6815.1.S1_at	At3g57330	-	-	4e-55	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage