Co-expression analysis

Gene ID Os11g0140400
Gene name
Homology with ArabidopsisSimilar to At3g57330: ACA11 (autoinhibited Ca2+-ATPase 11) (HF=2e-24)
Module size 6 genes
NF 0.23
%ile 22.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.89Os11g01404009640.m00336-Calcium-translocating P-type ATPase, PMCA-typefamily protein2e-24At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)O.I.H.G.S.X.
0.5573.70.89Os01g0236300AK102521.1-Auxin response factor 182e-2At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)O.I.H.G.S.X.
0.5068.00.90Os06g0222400AK063886.1-Hypothetical protein2e-3At5g46780VQ motif-containing proteinO.I.H.G.S.X.
0.1915.10.90Os01g0897600CA762923-Glycoside hydrolase, family 1 protein2e-7At5g36890BGLU42 (BETA GLUCOSIDASE 42)O.I.H.G.S.X.
0.1813.70.90Os05g0120700AK062874.1-Cation transporting ATPase, C-terminal domaincontaining protein2e-23At1g07810ECA1 (ER-TYPE CA2+-ATPASE 1)O.I.H.G.S.X. kinase domain containing protein3e-51At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.599.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.498.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.797.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57330, orthologous to the query gene, Os11g0140400

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6075.7At3g57330824900ACA11 (autoinhibited Ca2+-ATPase 11)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:chloroplast, plasma membrane, vacuole;BMOFPAVO.I.H.G.S.X.
0.4659.8At4g33300829466ADR1-L1 (ADR1-like 1)F:protein binding, ATP binding;P:defense response, apoptosis;C:apoplast;PMBOFAO.I.H.G.S.X.
0.4253.9At5g04720830350ADR1-L2 (ADR1-like 2)F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAO.I.H.G.S.X.
0.4050.8At4g23470828446hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:unknown;MOPFBVAO.I.H.G.S.X.
0.3948.4At4g17070827415peptidyl-prolyl cis-trans isomeraseF:peptidyl-prolyl cis-trans isomerase activity;P:response to oxidative stress;C:unknown;PBMOO.I.H.G.S.X.
0.3439.8At3g28450822474leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast, plasma membrane, membrane;PMOBFVAO.I.H.G.S.X.
0.3439.8At2g22300816762SR1 (SIGNAL RESPONSIVE 1)Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.O.I.H.G.S.X.
0.3133.8At4g33430829480BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome.O.I.H.G.S.X.
0.2726.2At3g12740820456ALIS1 (ALA-INTERACTING SUBUNIT 1)Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.O.I.H.G.S.X.
0.2420.7At4g37640829918ACA2 (CALCIUM ATPASE 2)Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.O.I.H.G.S.X.
0.2319.3At1g11310837673MLO2 (MILDEW RESISTANCE LOCUS O 2)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.O.I.H.G.S.X.
0.2217.5At1g31130839998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOAO.I.H.G.S.X.
0.2014.4At1g64280842733NPR1 (NONEXPRESSER OF PR GENES 1)This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.O.I.H.G.S.X.
0.1811.4At1g07630837276PLL5Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.O.I.H.G.S.X.
0.1710.2At3g57280824895unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PMOO.I.H.G.S.X.
0.1710.2At2g20900816624diacylglycerol kinase, putativeF:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.1710.2At2g21120816647unknown proteinF:unknown;P:biological_process unknown;C:unknown;MFPBOO.I.H.G.S.X.
0.146.8At4g29900829112ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.O.I.H.G.S.X.
0.135.8At1g02170839561AMC1 (METACASPASE 1)Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domainO.I.H.G.S.X.
0.124.9At1g07240837235UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.H.G.S.X.
0.103.4At1g61140842407EDA16 (embryo sac development arrest 16)F:in 6 functions;P:embryo sac development;C:unknown;MBFOPVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage