CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0132700

Gene name
Homology with Arabidopsis Similar to At3g56900: aladin-related / adracalin-related (HF=1e-6)

Module size 6 genes

NF 0.28

%ile 28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.96 Os11g0132700 AK103286.1 - Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein 1e-6 At3g56900 aladin-related / adracalin-related O.I. H.G. S.X.
0.67 87.2 0.97 Os12g0194700 AK121912.1 - DNA-directed RNA polymerase, 13 to 16 kDa subunitfamily protein 5e+0 At3g25040 ER lumen protein retaining receptor, putative / HDEL receptor, putative O.I. H.G. S.X.
0.32 36.3 0.96 Os05g0255600 AK073067.1 - Thioredoxin domain 2 containing protein 8e-4 At3g50960 PLP3a (Phosducin-like protein 3 homolog) O.I. H.G. S.X.
0.23 21.2 0.96 Os02g0481000 AK066511.1 - Conserved hypothetical protein 3e-2 At2g33510 protein binding O.I. H.G. S.X.
0.16 11.3 0.96 Os05g0558900 AK101679.1 - Phenylalanyl-tRNA synthetase beta chain (EC6.1.1.20) (Phenylalanine-- tRNA ligase beta chain)(PheRS) (HSPC173) 5e-6 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.
0.13 8.2 0.96 Os08g0344100 AK111861.1 - Histone deacetylase 2e-14 At5g63110 HDA6 (HISTONE DEACETYLASE 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.0 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0006432 The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
0.250 1 GO:0016575 The modification of histones by removal of acetyl groups.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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