CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0122700

Gene name
Homology with Arabidopsis Similar to At4g29610: cytidine deaminase, putative / cytidine aminohydrolase, putative (HF=1e+1)

Module size 6 genes

NF 0.73

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os11g0122700 9639.m00200 - - 1e+1 At4g29610 cytidine deaminase, putative / cytidine aminohydrolase, putative O.I. H.G. S.X.
0.67 87.2 0.99 Os09g0413800 9631.m05442 - - 6e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.61 81.2 0.99 Os02g0655000 9639.m04465 - - 2e-1 At3g04640 glycine-rich protein O.I. H.G. S.X.
0.61 81.2 0.99 Os01g0288301 NM_183574.1 - - 3e+0 At5g26720 unknown protein O.I. H.G. S.X.
0.61 81.2 0.99 Os03g0583700 9631.m03715 - Proteasome maturation factor UMP1 family protein 4e-1 At4g10880 unknown protein O.I. H.G. S.X.
0.60 79.7 0.99 Os05g0203400 9633.m00999 - Conserved hypothetical protein 3e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0009225 The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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