CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0114700

Gene name
Homology with Arabidopsis Similar to At3g51620: - (HF=4e-23)

Module size 8 genes

NF 0.44

%ile 55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.96 Os11g0114700 AK070834.1 - PAP/25A core domain containing protein 4e-23 At3g51620 - O.I. H.G. S.X.
0.63 82.7 0.96 Os12g0618300 AK103368.1 - GTP-binding protein-like (Fragment) 1e-37 At2g27200 GTP-binding family protein O.I. H.G. S.X.
0.61 81.2 0.96 Os04g0488000 AK111619.1 - PITSLRE serine/threonine-protein kinase CDC2L1 (EC2.7.1.37) (Galactosyltransferase associated proteinkinase p58/GTA) (Cell division cycle 2-like 1) 2e-71 At1g67580 protein kinase family protein O.I. H.G. S.X.
0.57 77.0 0.96 Os03g0211100 AK111910.1 - - 7e-10 At3g29270 ubiquitin-protein ligase O.I. H.G. S.X.
0.50 68.0 0.96 Os07g0690300 AK099674.1 - Zn-finger, RING domain containing protein 5e-10 At3g05670 PHD finger family protein O.I. H.G. S.X.
0.38 46.9 0.96 Os08g0333000 AK108356.1 - F7O18.23 protein (SWP1) (Struwwelpeter 1 protein) 1e-25 At3g04740 SWP (STRUWWELPETER) O.I. H.G. S.X.
0.30 32.7 0.96 Os09g0514900 AK102371.1 - Protein of unknown function DUF654 family protein 2e-2 At2g46900 - O.I. H.G. S.X.
0.26 25.6 0.96 Os07g0461600 AK121366.1 - TA7 protein (Fragment) 1e+0 At2g19890 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.1 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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