CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os11g0104900

Gene name
Homology with Arabidopsis Similar to At3g11130: clathrin heavy chain, putative (HF=9e-168)

Module size 21 genes

NF 0.33

%ile 35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.78 Os11g0104900 9639.m00033 - Clathrin heavy chain 9e-168 At3g11130 clathrin heavy chain, putative O.I. H.G. S.X.
0.60 79.7 0.84 Os10g0159600 AK064267.1 - Heat shock protein Hsp20 domain containing protein 3e+0 At2g03680 SPR1 (SPIRAL1) O.I. H.G. S.X.
0.56 76.3 0.87 Os03g0135200 AK059226.1 - Glutathione S-transferase GST 9 (EC 2.5.1.18) 2e+0 At4g10090 unknown protein O.I. H.G. S.X.
0.49 64.4 0.84 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 O.I. H.G. S.X.
0.49 64.4 0.86 Os07g0159700 9635.m00597 - Protein kinase domain containing protein 3e-2 At3g17420 GPK1 O.I. H.G. S.X.
0.48 63.7 0.88 Os07g0166700 AY332473.1 - Protein kinase domain containing protein 4e-1 At1g09483 unknown protein O.I. H.G. S.X.
0.46 60.9 0.88 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.44 58.1 0.88 Os09g0450600 9637.m02442 - TB2/DP1 and HVA22 related protein family protein 4e+0 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.40 51.1 0.88 Os10g0543800 AB103350.1 - Glutathione S-transferase 6e-1 At5g25940 early nodulin-related O.I. H.G. S.X.
0.36 44.0 0.87 Os03g0134900 AK102889.1 - Glutathione S-transferase GSTF14 (Fragment) 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) O.I. H.G. S.X.
0.34 40.0 0.87 Os03g0656100 AK062338.1 - Conserved hypothetical protein 4e-1 At3g32100 unknown protein O.I. H.G. S.X.
0.30 32.7 0.87 Os04g0447600 AK061282.1 - NADPH-dependent codeinone reductase (EC 1.1.1.247) 2e-1 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.29 31.1 0.88 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related O.I. H.G. S.X.
0.27 27.5 0.89 Os01g0213800 AB071805.1 - Transcription factor PCF5 5e-3 At2g31070 TCP10 (TCP DOMAIN PROTEIN 10) O.I. H.G. S.X.
0.22 19.4 0.87 Os05g0363500 CA757967 - ARM repeat fold domain containing protein 2e+0 At3g23245 unknown protein O.I. H.G. S.X.
0.21 17.9 0.93 Os11g0308800 AK068828.1 - Protein kinase-like domain containing protein 5e-1 At3g56800 CAM3 (CALMODULIN 3) O.I. H.G. S.X.
0.19 15.1 0.90 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.18 13.7 0.90 Os11g0558300 AK109777.1 - - 8e-11 At1g49430 LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) O.I. H.G. S.X.
0.17 12.6 0.92 Os03g0320800 AK103265.1 - Protein kinase domain containing protein 3e-2 At4g34670 40S ribosomal protein S3A (RPS3aB) O.I. H.G. S.X.
0.12 7.2 0.86 Os02g0219700 9630.m01160 - CD9/CD37/CD63 antigen family protein 4e-1 At5g60220 TET4 (TETRASPANIN4) O.I. H.G. S.X.
0.10 5.7 0.88 Os03g0338400 AK073378.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e+0 At1g61795 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	82.7	0.78	Os11g0104900	9639.m00033	-	Clathrin heavy chain	9e-168	At3g11130	clathrin heavy chain, putative	O.I.	H.G.	S.X.
0.60	79.7	0.84	Os10g0159600	AK064267.1	-	Heat shock protein Hsp20 domain containing protein	3e+0	At2g03680	SPR1 (SPIRAL1)	O.I.	H.G.	S.X.
0.56	76.3	0.87	Os03g0135200	AK059226.1	-	Glutathione S-transferase GST 9 (EC 2.5.1.18)	2e+0	At4g10090	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.84	Os07g0105900	AK059175.1	-	NB-ARC domain containing protein	1e-2	At2g22430	ATHB6	O.I.	H.G.	S.X.
0.49	64.4	0.86	Os07g0159700	9635.m00597	-	Protein kinase domain containing protein	3e-2	At3g17420	GPK1	O.I.	H.G.	S.X.
0.48	63.7	0.88	Os07g0166700	AY332473.1	-	Protein kinase domain containing protein	4e-1	At1g09483	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.88	Os02g0256100	AK059595.1	-	Glycoside hydrolase, family 28 protein	1e-24	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.44	58.1	0.88	Os09g0450600	9637.m02442	-	TB2/DP1 and HVA22 related protein family protein	4e+0	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.
0.40	51.1	0.88	Os10g0543800	AB103350.1	-	Glutathione S-transferase	6e-1	At5g25940	early nodulin-related	O.I.	H.G.	S.X.
0.36	44.0	0.87	Os03g0134900	AK102889.1	-	Glutathione S-transferase GSTF14 (Fragment)	3e+0	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.
0.34	40.0	0.87	Os03g0656100	AK062338.1	-	Conserved hypothetical protein	4e-1	At3g32100	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.87	Os04g0447600	AK061282.1	-	NADPH-dependent codeinone reductase (EC 1.1.1.247)	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.29	31.1	0.88	Os06g0217900	AK103765.1	-	Cyclin, C-terminal domain containing protein	8e-1	At4g14520	DNA-directed RNA polymerase II-related	O.I.	H.G.	S.X.
0.27	27.5	0.89	Os01g0213800	AB071805.1	-	Transcription factor PCF5	5e-3	At2g31070	TCP10 (TCP DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.
0.22	19.4	0.87	Os05g0363500	CA757967	-	ARM repeat fold domain containing protein	2e+0	At3g23245	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.93	Os11g0308800	AK068828.1	-	Protein kinase-like domain containing protein	5e-1	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.
0.19	15.1	0.90	Os02g0756100	AK060615.1	-	Conserved hypothetical protein	2e+0	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.
0.18	13.7	0.90	Os11g0558300	AK109777.1	-	-	8e-11	At1g49430	LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)	O.I.	H.G.	S.X.
0.17	12.6	0.92	Os03g0320800	AK103265.1	-	Protein kinase domain containing protein	3e-2	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.
0.12	7.2	0.86	Os02g0219700	9630.m01160	-	CD9/CD37/CD63 antigen family protein	4e-1	At5g60220	TET4 (TETRASPANIN4)	O.I.	H.G.	S.X.
0.10	5.7	0.88	Os03g0338400	AK073378.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	2e+0	At1g61795	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.2 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
19.2	99.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.4	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.3	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.012 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.012	1	GO:0045449	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os11g0104900
Gene name
Homology with Arabidopsis	Similar to At3g11130: clathrin heavy chain, putative (HF=9e-168)
Module size	21 genes
NF	0.33
%ile	35.7

Co-expression analysis

Gene ID Os11g0104900 Gene name Homology with ArabidopsisSimilar to At3g11130: clathrin heavy chain, putative (HF=9e-168) Module size 21 genes NF 0.33 %ile 35.7

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0121GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os11g0104900

Gene name
Homology with Arabidopsis Similar to At3g11130: clathrin heavy chain, putative (HF=9e-168)

Module size 21 genes

NF 0.33

%ile 35.7

SF Genes GO ID Process Name Link to AmiGO
0.012 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays