Co-expression analysis

Gene ID	Os10g0580900
Gene name
Homology with Arabidopsis	Similar to At4g25030: unknown protein (HF=5e-8)
Module size	6 genes
NF	0.69
%ile	91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.92	Os10g0580900	AK072734.1	-	Conserved hypothetical protein	5e-8	At4g25030	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	0.90	Os02g0126400	AF194413.1	-	Protein kinase CPK1	6e-30	At2g17890	CPK16	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.92	Os03g0285800	AF332873.1	-	MAP kinase 1 (MAP kinase MAPK5a)	8e-4	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.90	Os02g0165100	AK066645.1	-	Protein kinase domain containing protein	2e-4	At2g35620	FEI2 (FEI 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.92	Os03g0241300	AK072703.1	-	Hypothetical protein	1e+0	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.95	Os01g0908700	AK120427.1	-	Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A))	2e-17	At1g67800	copine-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	97.8	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
5.7	96.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6	96.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6	96.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5	96.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2	96.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1	96.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7	95.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7	95.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1487.1.S1_at, orthologous to the query gene, Os10g0580900

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	Ta.1487.1.S1_at	At4g25030	-	-	2e-1	At5g45410	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.20913.1.S1_a_at	At4g25030	-	-	4e-3	At2g22250	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.28213.1.A1_x_at	At4g25030	-	-	1e+0	At3g48640	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.28222.1.S1_at	At4g25030	-	-	2e-37	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.7219.1.S1_at	At4g25030	-	-	2e-6	At1g77870	MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.1728.1.S1_at	At4g25030	-	-	9e+0	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.9591.1.S1_x_at	At4g25030	-	-	6e-10	At5g64130	-	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.9591.2.S1_x_at	At4g25030	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.9302.1.S1_at	At4g25030	-	-	4e-2	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.6574.1.S1_at	At4g25030	-	-	3e+0	At4g04632	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.25447.1.S1_at	At4g25030	-	-	5e-1	At3g59220	PRN (PIRIN)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.1572.1.S1_a_at	At4g25030	-	-	3e-18	At5g66120	3-dehydroquinate synthase, putative	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.4303.1.S1_at	At4g25030	-	-	5e-7	At1g69640	SBH1 (SPHINGOID BASE HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.7027.3.S1_at	At4g25030	-	-	1e+0	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.4852.1.S1_at	At4g25030	-	-	4e-12	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage