CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0580900

Gene name
Homology with Arabidopsis Similar to At4g25030: unknown protein (HF=5e-8)

Module size 6 genes

NF 0.69

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein O.I. H.G. S.X.
0.71 89.6 0.90 Os02g0126400 AF194413.1 - Protein kinase CPK1 6e-30 At2g17890 CPK16 O.I. H.G. S.X.
0.60 79.7 0.92 Os03g0285800 AF332873.1 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.
0.53 71.3 0.90 Os02g0165100 AK066645.1 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) O.I. H.G. S.X.
0.50 68.0 0.92 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.44 58.1 0.95 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.92	Os10g0580900	AK072734.1	-	Conserved hypothetical protein	5e-8	At4g25030	unknown protein	O.I.	H.G.	S.X.
0.71	89.6	0.90	Os02g0126400	AF194413.1	-	Protein kinase CPK1	6e-30	At2g17890	CPK16	O.I.	H.G.	S.X.
0.60	79.7	0.92	Os03g0285800	AF332873.1	-	MAP kinase 1 (MAP kinase MAPK5a)	8e-4	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.
0.53	71.3	0.90	Os02g0165100	AK066645.1	-	Protein kinase domain containing protein	2e-4	At2g35620	FEI2 (FEI 2)	O.I.	H.G.	S.X.
0.50	68.0	0.92	Os03g0241300	AK072703.1	-	Hypothetical protein	1e+0	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os01g0908700	AK120427.1	-	Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A))	2e-17	At1g67800	copine-related	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 97.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
5.7 96.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.9	97.8	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
5.7	96.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6	96.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6	96.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5	96.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2	96.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1	96.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7	95.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7	95.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig4491_s_at, orthologous to the query gene, Os10g0580900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.4 Contig4491_s_at At4g25030 - - 7e-1 At5g45410 unknown protein O.I. H.G. S.X.
0.47 62.2 Contig6995_at At4g25030 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.
0.43 56.4 Contig6604_at At4g25030 - - 1e-4 At1g18100 E12A11 O.I. H.G. S.X.
0.43 56.4 Contig5978_at At4g25030 - - 2e+0 At5g65070 MAF4 (MADS AFFECTING FLOWERING 4) O.I. H.G. S.X.
0.41 53.9 Contig1394_s_at At4g25030 - - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.36 47.1 Contig15983_at At4g25030 - - 2e+0 At5g49010 SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) O.I. H.G. S.X.
0.35 45.1 Contig4290_at At4g25030 - - 4e-15 At4g32390 phosphate translocator-related O.I. H.G. S.X.
0.34 43.6 Contig6581_at At4g25030 - - 6e-2 At3g26330 CYP71B37 O.I. H.G. S.X.
0.32 40.3 Contig8140_at At4g25030 - - 7e+0 At3g04100 AGL57 O.I. H.G. S.X.
0.30 37.0 Contig3508_s_at At4g25030 - - 6e+0 At3g06700 60S ribosomal protein L29 (RPL29A) O.I. H.G. S.X.
0.30 37.0 Contig7557_s_at At4g25030 - - 6e-18 At5g17530 phosphoglucosamine mutase family protein O.I. H.G. S.X.
0.29 35.5 Contig9136_at At4g25030 - - 1e-5 At3g51140 - O.I. H.G. S.X.
0.29 35.5 Contig12632_at At4g25030 - - 2e-1 At1g69700 ATHVA22C O.I. H.G. S.X.
0.28 35.5 Contig4970_at At4g25030 - - 1e-9 At5g20950 glycosyl hydrolase family 3 protein O.I. H.G. S.X.
0.27 32.1 Contig6152_at At4g25030 - - 7e-2 At3g59140 ATMRP14 O.I. H.G. S.X.
0.27 32.1 Contig4175_at At4g25030 - - 1e-19 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.26 30.4 Contig3633_s_at At4g25030 - - 7e-1 At3g13480 unknown protein O.I. H.G. S.X.
0.26 30.4 Contig4337_at At4g25030 - - 5e-5 At1g14540 anionic peroxidase, putative O.I. H.G. S.X.
0.25 28.9 Contig15141_at At4g25030 - - 6e-1 At5g66380 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1) O.I. H.G. S.X.
0.23 26.1 Contig901_x_at At4g25030 - - 0 At1g56070 LOS1 O.I. H.G. S.X.
0.23 26.1 Contig8713_at At4g25030 - - 8e-5 At2g45270 glycoprotease M22 family protein O.I. H.G. S.X.
0.23 26.1 Contig16573_at At4g25030 - - 3e-2 At3g56610 unknown protein O.I. H.G. S.X.
0.22 24.2 Contig13081_at At4g25030 - - 9e-2 At3g25573 unknown protein O.I. H.G. S.X.
0.22 24.2 Contig10104_at At4g25030 - - 1e-16 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) O.I. H.G. S.X.
0.22 24.2 Contig7739_at At4g25030 - - 9e-7 At4g39660 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) O.I. H.G. S.X.
0.21 22.6 Contig5340_at At4g25030 - - 6e-3 At3g13330 binding O.I. H.G. S.X.
0.20 21.1 EBro08_SQ012_O08_s_at At4g25030 - - 3e+0 At1g26762 unknown protein O.I. H.G. S.X.
0.20 21.1 HX03D08u_s_at At4g25030 - - 6e-1 At1g04960 - O.I. H.G. S.X.
0.20 21.1 Contig5117_at At4g25030 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.19 19.6 Contig8829_at At4g25030 - - 1e-1 At1g18210 calcium-binding protein, putative O.I. H.G. S.X.
0.18 18.2 Contig9498_at At4g25030 - - 3e+0 At2g31940 unknown protein O.I. H.G. S.X.
0.18 18.2 Contig11464_at At4g25030 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.18 18.2 HW04A13u_s_at At4g25030 - - 2e+1 At5g66270 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.18 18.2 Contig19489_at At4g25030 - - 1e+0 At3g23171 unknown protein O.I. H.G. S.X.
0.16 15.3 Contig5297_at At4g25030 - - 4e-16 At1g64550 ATGCN3 O.I. H.G. S.X.
0.16 15.3 Contig8629_at At4g25030 - - 3e-6 At2g17190 ubiquitin family protein O.I. H.G. S.X.
0.16 15.3 Contig576_s_at At4g25030 - - 2e-21 At5g59690 histone H4 O.I. H.G. S.X.
0.15 14.1 Contig9419_at At4g25030 - - 4e-31 At5g52560 ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE) O.I. H.G. S.X.
0.15 14.1 HM02P13u_s_at At4g25030 - - 6e+0 At5g47980 transferase family protein O.I. H.G. S.X.
0.14 12.9 Contig6376_at At4g25030 - - 1e-10 At5g09900 EMB2107 (EMBRYO DEFECTIVE 2107) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.4	Contig4491_s_at	At4g25030	-	-	7e-1	At5g45410	unknown protein	O.I.	H.G.	S.X.
0.47	62.2	Contig6995_at	At4g25030	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.
0.43	56.4	Contig6604_at	At4g25030	-	-	1e-4	At1g18100	E12A11	O.I.	H.G.	S.X.
0.43	56.4	Contig5978_at	At4g25030	-	-	2e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.
0.41	53.9	Contig1394_s_at	At4g25030	-	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.
0.36	47.1	Contig15983_at	At4g25030	-	-	2e+0	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	O.I.	H.G.	S.X.
0.35	45.1	Contig4290_at	At4g25030	-	-	4e-15	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.
0.34	43.6	Contig6581_at	At4g25030	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.
0.32	40.3	Contig8140_at	At4g25030	-	-	7e+0	At3g04100	AGL57	O.I.	H.G.	S.X.
0.30	37.0	Contig3508_s_at	At4g25030	-	-	6e+0	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.
0.30	37.0	Contig7557_s_at	At4g25030	-	-	6e-18	At5g17530	phosphoglucosamine mutase family protein	O.I.	H.G.	S.X.
0.29	35.5	Contig9136_at	At4g25030	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.
0.29	35.5	Contig12632_at	At4g25030	-	-	2e-1	At1g69700	ATHVA22C	O.I.	H.G.	S.X.
0.28	35.5	Contig4970_at	At4g25030	-	-	1e-9	At5g20950	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.
0.27	32.1	Contig6152_at	At4g25030	-	-	7e-2	At3g59140	ATMRP14	O.I.	H.G.	S.X.
0.27	32.1	Contig4175_at	At4g25030	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.
0.26	30.4	Contig3633_s_at	At4g25030	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	Contig4337_at	At4g25030	-	-	5e-5	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.
0.25	28.9	Contig15141_at	At4g25030	-	-	6e-1	At5g66380	ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1)	O.I.	H.G.	S.X.
0.23	26.1	Contig901_x_at	At4g25030	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.
0.23	26.1	Contig8713_at	At4g25030	-	-	8e-5	At2g45270	glycoprotease M22 family protein	O.I.	H.G.	S.X.
0.23	26.1	Contig16573_at	At4g25030	-	-	3e-2	At3g56610	unknown protein	O.I.	H.G.	S.X.
0.22	24.2	Contig13081_at	At4g25030	-	-	9e-2	At3g25573	unknown protein	O.I.	H.G.	S.X.
0.22	24.2	Contig10104_at	At4g25030	-	-	1e-16	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	O.I.	H.G.	S.X.
0.22	24.2	Contig7739_at	At4g25030	-	-	9e-7	At4g39660	AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.
0.21	22.6	Contig5340_at	At4g25030	-	-	6e-3	At3g13330	binding	O.I.	H.G.	S.X.
0.20	21.1	EBro08_SQ012_O08_s_at	At4g25030	-	-	3e+0	At1g26762	unknown protein	O.I.	H.G.	S.X.
0.20	21.1	HX03D08u_s_at	At4g25030	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.
0.20	21.1	Contig5117_at	At4g25030	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.
0.19	19.6	Contig8829_at	At4g25030	-	-	1e-1	At1g18210	calcium-binding protein, putative	O.I.	H.G.	S.X.
0.18	18.2	Contig9498_at	At4g25030	-	-	3e+0	At2g31940	unknown protein	O.I.	H.G.	S.X.
0.18	18.2	Contig11464_at	At4g25030	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.
0.18	18.2	HW04A13u_s_at	At4g25030	-	-	2e+1	At5g66270	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.18	18.2	Contig19489_at	At4g25030	-	-	1e+0	At3g23171	unknown protein	O.I.	H.G.	S.X.
0.16	15.3	Contig5297_at	At4g25030	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.
0.16	15.3	Contig8629_at	At4g25030	-	-	3e-6	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.
0.16	15.3	Contig576_s_at	At4g25030	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.
0.15	14.1	Contig9419_at	At4g25030	-	-	4e-31	At5g52560	ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE)	O.I.	H.G.	S.X.
0.15	14.1	HM02P13u_s_at	At4g25030	-	-	6e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.
0.14	12.9	Contig6376_at	At4g25030	-	-	1e-10	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0580900
Gene name
Homology with Arabidopsis	Similar to At4g25030: unknown protein (HF=5e-8)
Module size	6 genes
NF	0.69
%ile	91.9

Co-expression analysis

Gene ID Os10g0580900 Gene name Homology with ArabidopsisSimilar to At4g25030: unknown protein (HF=5e-8) Module size 6 genes NF 0.69 %ile 91.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0580900

Gene name
Homology with Arabidopsis Similar to At4g25030: unknown protein (HF=5e-8)

Module size 6 genes

NF 0.69

%ile 91.9

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays