CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0580900

Gene name
Homology with Arabidopsis Similar to At4g25030: unknown protein (HF=5e-8)

Module size 6 genes

NF 0.69

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein O.I. H.G. S.X.
0.71 89.6 0.90 Os02g0126400 AF194413.1 - Protein kinase CPK1 6e-30 At2g17890 CPK16 O.I. H.G. S.X.
0.60 79.7 0.92 Os03g0285800 AF332873.1 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.
0.53 71.3 0.90 Os02g0165100 AK066645.1 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) O.I. H.G. S.X.
0.50 68.0 0.92 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.44 58.1 0.95 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 97.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
5.7 96.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7029.1.S1_at, orthologous to the query gene, Os10g0580900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 66.6 Gma.7029.1.S1_at At4g25030 - - 9e-13 At4g25030 unknown protein O.I. H.G. S.X.
0.60 80.7 Gma.10087.1.S1_at At4g25030 - - 7e-2 At1g06515 unknown protein O.I. H.G. S.X.
0.48 67.7 GmaAffx.39725.1.S1_at At4g25030 - - 8e-1 At3g57280 unknown protein O.I. H.G. S.X.
0.40 57.1 Gma.7635.1.S1_at At4g25030 - - 9e-7 At2g41790 peptidase M16 family protein / insulinase family protein O.I. H.G. S.X.
0.39 54.5 Gma.5594.1.S1_at At4g25030 - - 1e-9 At3g09840 CDC48 (CELL DIVISION CYCLE 48) O.I. H.G. S.X.
0.38 53.3 Gma.726.1.S1_s_at At4g25030 - - 4e-5 At3g05500 rubber elongation factor (REF) family protein O.I. H.G. S.X.
0.37 51.7 Gma.7139.1.S1_at At4g25030 - - 3e-2 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) O.I. H.G. S.X.
0.35 48.6 GmaAffx.93378.1.S1_s_at At4g25030 - - 3e-1 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) O.I. H.G. S.X.
0.35 48.6 Gma.1887.1.S1_at At4g25030 - - 2e-62 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) O.I. H.G. S.X.
0.31 42.2 GmaAffx.43676.1.S1_at At4g25030 - - 8e-7 At2g47510 FUM1 (FUMARASE 1) O.I. H.G. S.X.
0.21 26.6 Gma.2520.1.S1_at At4g25030 - - 2e-7 At2g46500 phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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