CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0578200

Gene name
Homology with Arabidopsis Similar to At5g16910: CSLD2 (CELLULOSE-SYNTHASE LIKE D2) (HF=5e-41)

Module size 6 genes

NF 0.30

%ile 31.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.89 Os10g0578200 AK110534.1 - Cellulose synthase-9 5e-41 At5g16910 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) O.I. H.G. S.X.
0.50 68.0 0.90 Os02g0578300 AK105275.1 - - 2e-7 At1g22400 UGT85A1 O.I. H.G. S.X.
0.38 46.9 0.89 Os08g0203700 AK100532.1 - Protein kinase domain containing protein 2e-3 At1g56120 kinase O.I. H.G. S.X.
0.31 34.5 0.90 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) O.I. H.G. S.X.
0.18 13.7 0.90 Os01g0653200 AK110920.1 - Glycosyl transferase, group 1 domain containingprotein 9e-1 At1g71910 unknown protein O.I. H.G. S.X.
0.13 8.2 0.90 Os03g0624600 AK062675.1 - No apical meristem (NAM) protein domain containingprotein 1e-2 At5g18270 ANAC087 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
8.2 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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