CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0561100

Gene name
Homology with Arabidopsis Similar to At5g61510: NADP-dependent oxidoreductase, putative (HF=1e-3)

Module size 46 genes

NF 0.32

%ile 34.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.98 Os10g0561100 AK110882.1 - Quinone oxidoreductase 1e-3 At5g61510 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.54 71.9 0.99 Os04g0180300 AK111372.1 - Conserved hypothetical protein 2e+0 At5g19875 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os10g0167650 9638.m00729 - - 3e+0 At5g46877 - O.I. H.G. S.X.
0.49 64.4 0.99 Os08g0218900 9636.m01238 - - 7e-2 At1g52320 unknown protein O.I. H.G. S.X.
0.47 62.3 0.98 Os10g0548500 9638.m03630 - - 2e-5 At4g36780 transcription regulator O.I. H.G. S.X.
0.47 62.3 0.99 Os11g0459000 9639.m02425 - - 7e-1 At1g32200 ATS1 O.I. H.G. S.X.
0.46 60.9 0.99 Os01g0237333 NM_188682.1 - - 2e+0 At3g61111 structural constituent of ribosome O.I. H.G. S.X.
0.45 58.8 0.99 Os06g0270000 9634.m01595 - - 9e+0 At4g28085 unknown protein O.I. H.G. S.X.
0.44 58.1 0.98 Os01g0134200 NM_184267.1 - Conserved hypothetical protein 2e+0 At3g29560 unknown protein O.I. H.G. S.X.
0.44 58.1 0.99 Os04g0633200 9632.m05252 - S-locus glycoprotein family protein 9e-8 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.44 58.1 0.99 Os03g0846500 9631.m06221 - - 2e+0 At3g55880 unknown protein O.I. H.G. S.X.
0.41 52.4 0.98 Os11g0613500 9639.m03638 - - 3e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.41 52.4 0.99 Os01g0800200 9629.m05751 - Phosphoglycerate kinase family protein 7e-22 At1g56190 phosphoglycerate kinase, putative O.I. H.G. S.X.
0.39 48.3 0.98 Os04g0168300 AK111111.1 - Hypothetical protein 4e-1 At4g10910 unknown protein O.I. H.G. S.X.
0.39 48.3 0.98 Os03g0785600 9631.m05611 - - 2e-1 At5g05140 transcription elongation factor-related O.I. H.G. S.X.
0.38 46.9 0.99 Os12g0297250 9640.m01989 - - 9e-1 At5g44574 unknown protein O.I. H.G. S.X.
0.38 46.9 0.99 Os05g0483600 9631.m02049 - - 2e-6 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative O.I. H.G. S.X.
0.37 45.0 0.99 Os03g0644700 AK072883.1 - - 5e-2 At3g30580 unknown protein O.I. H.G. S.X.
0.37 45.0 0.99 Os11g0641000 XM_354350.1 - - 1e-1 At1g55265 unknown protein O.I. H.G. S.X.
0.35 41.7 0.99 Os07g0624450 9635.m04326 - - 1e+0 At1g76952 IDL5 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 5) O.I. H.G. S.X.
0.34 40.0 0.98 Os01g0882200 9629.m06542 - - 3e+0 At4g32080 unknown protein O.I. H.G. S.X.
0.31 34.5 0.98 Os01g0356950 9629.m02471 - - 1e+0 At4g35060 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.
0.30 32.7 0.99 Os01g0746800 9629.m05295 - - 2e+0 At2g32140 transmembrane receptor O.I. H.G. S.X.
0.30 32.7 0.99 Os08g0299100 9640.m02491 - - 8e-2 At2g19330 leucine-rich repeat family protein O.I. H.G. S.X.
0.29 31.1 0.99 Os11g0413300 9639.m01956 - - 1e+0 At5g43755 - O.I. H.G. S.X.
0.29 31.1 0.99 Os09g0265800 AK120499.1 - HGWP repeat containing protein 6e-2 At1g71870 MATE efflux family protein O.I. H.G. S.X.
0.28 31.1 0.99 Os01g0350300 9629.m02402 - - 1e-3 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.27 27.5 0.99 Os07g0414900 AK068756.1 - Transposable element Ac 4e-1 At4g26370 antitermination NusB domain-containing protein O.I. H.G. S.X.
0.26 25.6 0.98 Os06g0202600 AK064228.1 - Conserved hypothetical protein 5e-2 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) O.I. H.G. S.X.
0.26 25.6 0.99 Os11g0673000 9639.m04176 - Protein prenyltransferase domain containingprotein 5e-2 At3g62890 binding O.I. H.G. S.X.
0.26 25.6 0.99 Os01g0970200 NM_189446.1 - - 2e-1 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.25 24.1 0.98 Os11g0623700 AK063799.1 - Conserved hypothetical protein 2e+0 At3g48100 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) O.I. H.G. S.X.
0.24 22.4 0.99 Os11g0671200 9639.m04164 - - 4e-4 At5g66110 metal ion binding O.I. H.G. S.X.
0.24 22.4 0.99 Os04g0193300 AK106803.1 - Cyclin-like F-box domain containing protein 1e-3 At5g35170 adenylate kinase family protein O.I. H.G. S.X.
0.24 22.4 0.99 Os06g0171300 9634.m00677 - - 2e+0 At1g78740 - O.I. H.G. S.X.
0.24 22.4 0.98 Os03g0253200 9633.m01445 - Cucumber protein kinase CsPK3 1e+0 At4g22810 DNA-binding protein-related O.I. H.G. S.X.
0.22 19.4 0.99 Os01g0314700 9629.m02028 - Disease resistance protein family protein 1e+0 At4g27550 ATTPS4 O.I. H.G. S.X.
0.21 17.9 0.98 Os06g0246400 9634.m01365 - - 9e-1 At3g25233 unknown protein O.I. H.G. S.X.
0.21 17.9 0.99 Os05g0493900 9633.m03962 - - 4e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.21 17.9 0.98 Os08g0140000 BI798729 - - 4e+0 At5g37780 CAM1 (CALMODULIN 1) O.I. H.G. S.X.
0.17 12.6 0.99 Os01g0367350 9629.m02571 - - 8e+0 At2g33870 ArRABA1h (Arabidopsis Rab GTPase homolog A1h) O.I. H.G. S.X.
0.17 12.6 0.99 Os06g0246200 9634.m01364 - - 8e-1 At2g02250 AtPP2-B2 (Phloem protein 2-B2) O.I. H.G. S.X.
0.17 12.6 0.99 Os01g0215800 NM_188449.1 - - 1e+1 At5g13450 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative O.I. H.G. S.X.
0.15 10.3 0.99 Os07g0690500 AK108634.1 - Hypothetical protein 3e+0 At5g37240 unknown protein O.I. H.G. S.X.
0.14 9.3 0.98 Os07g0136700 9635.m00368 - - 3e+0 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.12 7.2 0.99 Os05g0273201 9633.m01723 - - 4e+0 At2g46150 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.98	Os10g0561100	AK110882.1	-	Quinone oxidoreductase	1e-3	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.
0.54	71.9	0.99	Os04g0180300	AK111372.1	-	Conserved hypothetical protein	2e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os10g0167650	9638.m00729	-	-	3e+0	At5g46877	-	O.I.	H.G.	S.X.
0.49	64.4	0.99	Os08g0218900	9636.m01238	-	-	7e-2	At1g52320	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os10g0548500	9638.m03630	-	-	2e-5	At4g36780	transcription regulator	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os11g0459000	9639.m02425	-	-	7e-1	At1g32200	ATS1	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os01g0237333	NM_188682.1	-	-	2e+0	At3g61111	structural constituent of ribosome	O.I.	H.G.	S.X.
0.45	58.8	0.99	Os06g0270000	9634.m01595	-	-	9e+0	At4g28085	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os01g0134200	NM_184267.1	-	Conserved hypothetical protein	2e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os04g0633200	9632.m05252	-	S-locus glycoprotein family protein	9e-8	At4g03230	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os03g0846500	9631.m06221	-	-	2e+0	At3g55880	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os11g0613500	9639.m03638	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.41	52.4	0.99	Os01g0800200	9629.m05751	-	Phosphoglycerate kinase family protein	7e-22	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os04g0168300	AK111111.1	-	Hypothetical protein	4e-1	At4g10910	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os03g0785600	9631.m05611	-	-	2e-1	At5g05140	transcription elongation factor-related	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os12g0297250	9640.m01989	-	-	9e-1	At5g44574	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os05g0483600	9631.m02049	-	-	2e-6	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.
0.37	45.0	0.99	Os03g0644700	AK072883.1	-	-	5e-2	At3g30580	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.99	Os11g0641000	XM_354350.1	-	-	1e-1	At1g55265	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.99	Os07g0624450	9635.m04326	-	-	1e+0	At1g76952	IDL5 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 5)	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os01g0882200	9629.m06542	-	-	3e+0	At4g32080	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os01g0356950	9629.m02471	-	-	1e+0	At4g35060	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os01g0746800	9629.m05295	-	-	2e+0	At2g32140	transmembrane receptor	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os08g0299100	9640.m02491	-	-	8e-2	At2g19330	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os11g0413300	9639.m01956	-	-	1e+0	At5g43755	-	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os09g0265800	AK120499.1	-	HGWP repeat containing protein	6e-2	At1g71870	MATE efflux family protein	O.I.	H.G.	S.X.
0.28	31.1	0.99	Os01g0350300	9629.m02402	-	-	1e-3	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os07g0414900	AK068756.1	-	Transposable element Ac	4e-1	At4g26370	antitermination NusB domain-containing protein	O.I.	H.G.	S.X.
0.26	25.6	0.98	Os06g0202600	AK064228.1	-	Conserved hypothetical protein	5e-2	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os11g0673000	9639.m04176	-	Protein prenyltransferase domain containingprotein	5e-2	At3g62890	binding	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os01g0970200	NM_189446.1	-	-	2e-1	At2g23310	ATRER1C1	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os11g0623700	AK063799.1	-	Conserved hypothetical protein	2e+0	At3g48100	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	O.I.	H.G.	S.X.
0.24	22.4	0.99	Os11g0671200	9639.m04164	-	-	4e-4	At5g66110	metal ion binding	O.I.	H.G.	S.X.
0.24	22.4	0.99	Os04g0193300	AK106803.1	-	Cyclin-like F-box domain containing protein	1e-3	At5g35170	adenylate kinase family protein	O.I.	H.G.	S.X.
0.24	22.4	0.99	Os06g0171300	9634.m00677	-	-	2e+0	At1g78740	-	O.I.	H.G.	S.X.
0.24	22.4	0.98	Os03g0253200	9633.m01445	-	Cucumber protein kinase CsPK3	1e+0	At4g22810	DNA-binding protein-related	O.I.	H.G.	S.X.
0.22	19.4	0.99	Os01g0314700	9629.m02028	-	Disease resistance protein family protein	1e+0	At4g27550	ATTPS4	O.I.	H.G.	S.X.
0.21	17.9	0.98	Os06g0246400	9634.m01365	-	-	9e-1	At3g25233	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.99	Os05g0493900	9633.m03962	-	-	4e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.21	17.9	0.98	Os08g0140000	BI798729	-	-	4e+0	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.
0.17	12.6	0.99	Os01g0367350	9629.m02571	-	-	8e+0	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	O.I.	H.G.	S.X.
0.17	12.6	0.99	Os06g0246200	9634.m01364	-	-	8e-1	At2g02250	AtPP2-B2 (Phloem protein 2-B2)	O.I.	H.G.	S.X.
0.17	12.6	0.99	Os01g0215800	NM_188449.1	-	-	1e+1	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	O.I.	H.G.	S.X.
0.15	10.3	0.99	Os07g0690500	AK108634.1	-	Hypothetical protein	3e+0	At5g37240	unknown protein	O.I.	H.G.	S.X.
0.14	9.3	0.98	Os07g0136700	9635.m00368	-	-	3e+0	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.12	7.2	0.99	Os05g0273201	9633.m01723	-	-	4e+0	At2g46150	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.1 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.6 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
22.1	99.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
21.6	99.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.1	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.041 1 GO:0009399 The process by which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.041	1	GO:0009399	The process by which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0561100
Gene name
Homology with Arabidopsis	Similar to At5g61510: NADP-dependent oxidoreductase, putative (HF=1e-3)
Module size	46 genes
NF	0.32
%ile	34.3

Co-expression analysis

Gene ID Os10g0561100 Gene name Homology with ArabidopsisSimilar to At5g61510: NADP-dependent oxidoreductase, putative (HF=1e-3) Module size 46 genes NF 0.32 %ile 34.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0411GO:0009399The process by which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0561100

Gene name
Homology with Arabidopsis Similar to At5g61510: NADP-dependent oxidoreductase, putative (HF=1e-3)

Module size 46 genes

NF 0.32

%ile 34.3

SF Genes GO ID Process Name Link to AmiGO
0.041 1 GO:0009399 The process by which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays