Co-expression analysis

Gene ID	Os10g0555600
Gene name
Homology with Arabidopsis	Similar to At3g06080: unknown protein (HF=4e-2)
Module size	6 genes
NF	0.26
%ile	25.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	93.1	0.82	Os10g0555600	AF261274.1	-	Beta-expansin precursor	4e-2	At3g06080	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.82	Os01g0594300	AK105670.1	-	Extensin-like protein	4e+0	At4g13340	leucine-rich repeat family protein / extensin family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	0.83	Os03g0212800	AY129294.1	-	Beta-glucosidase	5e-12	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	0.85	Os03g0633800	AK073044.1	-	IAA6 (Fragment)	2e+0	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	0.83	Os03g0116400	AK061443.1	-	Membrane protein	1e-8	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	0.83	Os05g0499300	D14997.1	-	Peroxidase precursor (EC 1.11.1.7)	7e-1	At3g21770	peroxidase 30 (PER30) (P30) (PRXR9)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
91.4	100.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
20.0	99.1	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.6	99.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.8	97.8	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM240996	Zhonghua11 7 DAF, biological replicate 3	GSE9498	Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
6.6	97.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM159219	Seed (S5, 21 - 29 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
6.1	97.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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