CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0552800

Gene name
Homology with Arabidopsis Similar to At2g25820: transcription factor (HF=9e-2)

Module size 6 genes

NF 0.71

%ile 93.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.90 Os10g0552800 AK062381.1 - RCc3 protein 9e-2 At2g25820 transcription factor O.I. H.G. S.X.
0.80 94.6 0.94 Os02g0662000 AK109149.1 - RCc3 protein 1e-1 At2g25820 transcription factor O.I. H.G. S.X.
0.60 79.7 0.94 Os02g0658100 AB114830.1 - Aquaporin TIP2.1 (Tonoplast intrinsic protein 2.1)(Delta-tonoplast intrinsic protein) (Delta-TIP) 7e-19 At3g16240 DELTA-TIP O.I. H.G. S.X.
0.57 77.0 0.93 Os02g0653200 AK062889.1 - Cupredoxin domain containing protein 7e-3 At1g72230 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.56 76.3 0.90 Os02g0256200 AB110701.1 - Conserved hypothetical protein 1e-1 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.50 68.0 0.93 Os01g0263300 AK102117.1 - - 4e-8 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
5.9 97.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 2 GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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