Co-expression analysis

Gene ID Os10g0552700
Gene name
Homology with ArabidopsisSimilar to At5g67600: unknown protein (HF=2e+1)
Module size 7 genes
NF 0.15
%ile 13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7591.90.70Os10g0552700AK063090.1-Tumor-related protein (Fragment)2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.4458.10.82Os02g0542500AK109859.1--5e-2At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.2422.40.86Os10g0552800AK062381.1-RCc3 protein9e-2At2g25820transcription factorO.I.H.G.S.X.
0.1510.30.85Os01g0264400NM_187993.1-Conserved hypothetical protein2e-4At3g10040transcription factorO.I.H.G.S.X.
0.105.70.85Os03g0563600AK122030.1-Peroxidase 56 precursor (EC 1.11.1.7) (AtperoxP56) (ATP33)2e-1At5g15180peroxidase, putativeO.I.H.G.S.X.
0.084.20.81Os05g0135000AK109054.1--6e-1At5g51890peroxidaseO.I.H.G.S.X.
0.052.50.83Os10g0552600AK062911.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At3g0219060S ribosomal protein L39 (RPL39B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.798.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM159179Root, 7-day-old Seedling, biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
8.297.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1543GO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO
0.0211GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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