CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0548900

Gene name
Homology with Arabidopsis Similar to At1g63680: MURE (HF=3e-7)

Module size 6 genes

NF 0.40

%ile 49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os10g0548900 AK067162.1 - Cytoplasmic peptidoglycan synthetase, N-terminaldomain containing protein 3e-7 At1g63680 MURE O.I. H.G. S.X.
0.50 68.0 0.93 Os05g0567300 AK112068.1 - GTP-binding protein Era family protein 2e-13 At5g66470 GTP binding / RNA binding O.I. H.G. S.X.
0.50 68.0 0.94 Os02g0711200 AK106470.1 - Hypothetical protein 6e-11 At1g26090 unknown protein O.I. H.G. S.X.
0.44 58.1 0.94 Os11g0610900 AK100567.1 - Seryl-tRNA synthetase, class IIa family protein 7e-8 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.30 32.7 0.94 Os03g0232500 AK110980.1 - GTP-binding domain containing protein 3e-9 At2g22870 EMB2001 (embryo defective 2001) O.I. H.G. S.X.
0.17 12.6 0.94 Os09g0363100 AK065958.1 - Protein of unknown function UPF0044 family protein 4e-4 At4g29750 RNA binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.3 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.7 98.1 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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