CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0540400

Gene name
Homology with Arabidopsis Similar to At4g21720: unknown protein (HF=2e-1)

Module size 10 genes

NF 0.15

%ile 13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 0.98 Os10g0540400 9638.m03569 - - 2e-1 At4g21720 unknown protein O.I. H.G. S.X.
0.42 53.9 0.99 Os08g0346100 9636.m02531 - - 8e+0 At5g46871 - O.I. H.G. S.X.
0.33 38.8 0.99 Os05g0417800 9633.m03199 - - 2e-2 At3g06778 heat shock protein binding / unfolded protein binding O.I. H.G. S.X.
0.31 34.5 0.99 Os02g0305300 9630.m01933 - Disease resistance protein family protein 1e+0 At2g32720 CB5-B (CYTOCHROME B5 ISOFORM B) O.I. H.G. S.X.
0.29 31.1 0.99 Os05g0220366 9633.m01151 - - 2e-1 At3g60670 zinc-binding protein, putative O.I. H.G. S.X.
0.15 10.3 0.99 Os03g0828000 9631.m06038 - - 1e-1 At2g36160 40S ribosomal protein S14 (RPS14A) O.I. H.G. S.X.
0.14 9.3 0.99 Os05g0300800 9633.m02088 - - 2e-1 At1g23680 unknown protein O.I. H.G. S.X.
0.11 6.5 0.99 Os07g0229500 9634.m00501 - - 2e+0 At3g46440 UXS5 O.I. H.G. S.X.
0.09 4.9 0.99 Os04g0591700 9632.m04881 - - 7e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.05 2.5 0.99 Os02g0517800 9630.m03010 - - 7e-2 At3g58370 K-Cl Co-transporter type 1 protein-related / KCC1 protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.7 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.5 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
6.6 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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