CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0530500

Gene name
Homology with Arabidopsis Similar to At3g09270: ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) (HF=1e-1)

Module size 37 genes

NF 0.57

%ile 76.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 0.93 Os10g0530500 AF402800.1 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At3g09270 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) O.I. H.G. S.X.
0.82 95.0 0.92 Os12g0628100 AK121150.1 - Actin depolymerizing factor (ADF) (Fragment) 2e-9 At4g25590 ADF7 (actin depolymerizing factor 7) O.I. H.G. S.X.
0.79 93.6 0.94 Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) O.I. H.G. S.X.
0.78 93.4 0.92 Os01g0734600 AK103129.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-3 At1g70470 unknown protein O.I. H.G. S.X.
0.73 91.1 0.93 Os11g0621400 AK062468.1 - Hypothetical protein 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.72 89.8 0.92 Os04g0507100 AK066402.1 - Conserved hypothetical protein 3e-3 At4g28740 - O.I. H.G. S.X.
0.71 89.6 0.95 Os02g0593500 AK067498.1 - - 6e-18 At3g26570 PHT2 O.I. H.G. S.X.
0.71 89.6 0.92 Os07g0558300 AK120618.1 - Inositol monophosphatase family protein 5e-2 At4g05090 inositol monophosphatase family protein O.I. H.G. S.X.
0.66 83.9 0.94 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein O.I. H.G. S.X.
0.66 83.9 0.93 Os12g0271700 AK110824.1 - Solanesyl diphosphate synthase 1e-18 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) O.I. H.G. S.X.
0.64 83.4 0.94 Os02g0285800 AK099035.1 - GTP-binding protein TypA family protein 4e-62 At5g13650 elongation factor family protein O.I. H.G. S.X.
0.63 82.7 0.93 Os03g0838900 AK066994.1 - Conserved hypothetical protein 9e-3 At4g09620 - O.I. H.G. S.X.
0.62 81.5 0.93 Os08g0566600 AK066210.1 - Conserved hypothetical protein 3e-2 At2g05620 PGR5 (proton gradient regulation 5) O.I. H.G. S.X.
0.61 81.2 0.93 Os01g0866400 BU667041 - Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment) 8e-38 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative O.I. H.G. S.X.
0.60 79.7 0.94 Os08g0114100 AK099560.1 - Conserved hypothetical protein 4e-27 At1g64680 unknown protein O.I. H.G. S.X.
0.59 78.0 0.94 Os10g0419500 AK071316.1 - Acireductone dioxygenase, ARD family protein 2e-10 At5g43850 ARD4 O.I. H.G. S.X.
0.59 78.0 0.91 Os04g0657500 AK066638.1 - Lipase, class 3 family protein 1e+0 At3g17100 transcription factor O.I. H.G. S.X.
0.59 78.0 0.93 Os01g0938100 CB680541 - Photosystem II protein PsbW, class I familyprotein 2e+0 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.56 76.3 0.93 Os02g0556800 AK100187.1 - Conserved hypothetical protein 3e-2 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.56 76.3 0.93 Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein O.I. H.G. S.X.
0.56 76.3 0.93 Os09g0460400 AK067180.1 - Esterase/lipase/thioesterase domain containingprotein 9e+0 At5g06570 hydrolase O.I. H.G. S.X.
0.56 76.3 0.92 Os08g0432500 AK106170.1 - ATP-dependent Clp protease adaptor protein ClpSfamily protein 3e-2 At3g61678 unknown protein O.I. H.G. S.X.
0.54 71.9 0.94 Os11g0127800 AK059969.1 - Forkhead-associated domain containing protein 1e-1 At4g38092 unknown protein O.I. H.G. S.X.
0.54 71.9 0.95 Os11g0432400 AK068090.1 - 2-oxoglutarate/malate translocator 2e-13 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) O.I. H.G. S.X.
0.53 71.3 0.94 Os09g0532700 AK069946.1 - Alpha/beta hydrolase family protein 2e-2 At4g25290 DNA photolyase O.I. H.G. S.X.
0.50 68.0 0.90 Os05g0582300 AK101790.1 - Solanesyl diphosphate synthase 2e-17 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) O.I. H.G. S.X.
0.50 68.0 0.91 Os12g0626400 AK063967.1 - Squalene/phytoene synthase family protein 7e-10 At5g17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase O.I. H.G. S.X.
0.49 64.4 0.94 Os01g0585300 AK099180.1 - Protein of unknown function DUF1118 family protein 5e-3 At1g74730 unknown protein O.I. H.G. S.X.
0.48 63.7 0.96 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.
0.45 58.8 0.96 Os02g0764500 AK066291.1 - Lhca5 protein 8e-3 At1g45474 LHCA5 O.I. H.G. S.X.
0.45 58.8 0.94 Os11g0595200 AK106159.1 - PAP fibrillin family protein 4e-2 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.
0.42 53.9 0.94 Os08g0553800 AK065711.1 - Isoflavone reductase family protein 1e-25 At4g35250 vestitone reductase-related O.I. H.G. S.X.
0.42 53.9 0.94 Os04g0448600 AK068709.1 - ChaC-like protein family protein 2e-3 At1g44790 ChaC-like family protein O.I. H.G. S.X.
0.38 46.9 0.95 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding O.I. H.G. S.X.
0.38 46.9 0.95 Os12g0420200 CB652532 - 38 kDa ribosome-associated protein 1e+0 At1g31250 proline-rich family protein O.I. H.G. S.X.
0.37 45.0 0.93 Os04g0539000 AK105343.1 - Conserved hypothetical protein 9e-3 At4g37925 NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex) O.I. H.G. S.X.
0.28 31.1 0.94 Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.6	0.93	Os10g0530500	AF402800.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	1e-1	At3g09270	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	O.I.	H.G.	S.X.
0.82	95.0	0.92	Os12g0628100	AK121150.1	-	Actin depolymerizing factor (ADF) (Fragment)	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.
0.79	93.6	0.94	Os04g0657300	CB624212	-	Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)	2e-1	At1g68552	CPuORF53 (Conserved peptide upstream open reading frame 53)	O.I.	H.G.	S.X.
0.78	93.4	0.92	Os01g0734600	AK103129.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-3	At1g70470	unknown protein	O.I.	H.G.	S.X.
0.73	91.1	0.93	Os11g0621400	AK062468.1	-	Hypothetical protein	1e+0	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.72	89.8	0.92	Os04g0507100	AK066402.1	-	Conserved hypothetical protein	3e-3	At4g28740	-	O.I.	H.G.	S.X.
0.71	89.6	0.95	Os02g0593500	AK067498.1	-	-	6e-18	At3g26570	PHT2	O.I.	H.G.	S.X.
0.71	89.6	0.92	Os07g0558300	AK120618.1	-	Inositol monophosphatase family protein	5e-2	At4g05090	inositol monophosphatase family protein	O.I.	H.G.	S.X.
0.66	83.9	0.94	Os03g0128800	AK066570.1	-	Conserved hypothetical protein	7e-1	At1g23530	unknown protein	O.I.	H.G.	S.X.
0.66	83.9	0.93	Os12g0271700	AK110824.1	-	Solanesyl diphosphate synthase	1e-18	At1g17050	SPS2 (Solanesyl diphosphate synthase 2)	O.I.	H.G.	S.X.
0.64	83.4	0.94	Os02g0285800	AK099035.1	-	GTP-binding protein TypA family protein	4e-62	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.
0.63	82.7	0.93	Os03g0838900	AK066994.1	-	Conserved hypothetical protein	9e-3	At4g09620	-	O.I.	H.G.	S.X.
0.62	81.5	0.93	Os08g0566600	AK066210.1	-	Conserved hypothetical protein	3e-2	At2g05620	PGR5 (proton gradient regulation 5)	O.I.	H.G.	S.X.
0.61	81.2	0.93	Os01g0866400	BU667041	-	Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment)	8e-38	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.
0.60	79.7	0.94	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	O.I.	H.G.	S.X.
0.59	78.0	0.94	Os10g0419500	AK071316.1	-	Acireductone dioxygenase, ARD family protein	2e-10	At5g43850	ARD4	O.I.	H.G.	S.X.
0.59	78.0	0.91	Os04g0657500	AK066638.1	-	Lipase, class 3 family protein	1e+0	At3g17100	transcription factor	O.I.	H.G.	S.X.
0.59	78.0	0.93	Os01g0938100	CB680541	-	Photosystem II protein PsbW, class I familyprotein	2e+0	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.
0.56	76.3	0.93	Os02g0556800	AK100187.1	-	Conserved hypothetical protein	3e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.56	76.3	0.93	Os03g0744700	AK071178.1	-	Conserved hypothetical protein	4e-2	At1g62250	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.93	Os09g0460400	AK067180.1	-	Esterase/lipase/thioesterase domain containingprotein	9e+0	At5g06570	hydrolase	O.I.	H.G.	S.X.
0.56	76.3	0.92	Os08g0432500	AK106170.1	-	ATP-dependent Clp protease adaptor protein ClpSfamily protein	3e-2	At3g61678	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.94	Os11g0127800	AK059969.1	-	Forkhead-associated domain containing protein	1e-1	At4g38092	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.95	Os11g0432400	AK068090.1	-	2-oxoglutarate/malate translocator	2e-13	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	O.I.	H.G.	S.X.
0.53	71.3	0.94	Os09g0532700	AK069946.1	-	Alpha/beta hydrolase family protein	2e-2	At4g25290	DNA photolyase	O.I.	H.G.	S.X.
0.50	68.0	0.90	Os05g0582300	AK101790.1	-	Solanesyl diphosphate synthase	2e-17	At1g17050	SPS2 (Solanesyl diphosphate synthase 2)	O.I.	H.G.	S.X.
0.50	68.0	0.91	Os12g0626400	AK063967.1	-	Squalene/phytoene synthase family protein	7e-10	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os01g0585300	AK099180.1	-	Protein of unknown function DUF1118 family protein	5e-3	At1g74730	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os01g0912700	AK068528.1	-	Conserved hypothetical protein	1e-1	At2g01340	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	0.96	Os02g0764500	AK066291.1	-	Lhca5 protein	8e-3	At1g45474	LHCA5	O.I.	H.G.	S.X.
0.45	58.8	0.94	Os11g0595200	AK106159.1	-	PAP fibrillin family protein	4e-2	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.
0.42	53.9	0.94	Os08g0553800	AK065711.1	-	Isoflavone reductase family protein	1e-25	At4g35250	vestitone reductase-related	O.I.	H.G.	S.X.
0.42	53.9	0.94	Os04g0448600	AK068709.1	-	ChaC-like protein family protein	2e-3	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os07g0171100	AK066475.1	-	TPR-like domain containing protein	2e-16	At1g55480	binding / protein binding	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os12g0420200	CB652532	-	38 kDa ribosome-associated protein	1e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.
0.37	45.0	0.93	Os04g0539000	AK105343.1	-	Conserved hypothetical protein	9e-3	At4g37925	NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)	O.I.	H.G.	S.X.
0.28	31.1	0.94	Os08g0162600	AK060121.1	-	Rubredoxin-type Fe(Cys)4 protein family protein	6e-22	At5g17170	ENH1 (enhancer of sos3-1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.2 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
23.2	99.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.1	99.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.0	98.8	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
9.4	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.3	97.5	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2	97.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.063 2 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.043 1 GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
0.041 1 GO:0009765 Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

SF	Genes	GO ID	Process Name
0.063	2	GO:0007242	A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.043	1	GO:0008299	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
0.041	1	GO:0009765	Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os10g0530500
Gene name
Homology with Arabidopsis	Similar to At3g09270: ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) (HF=1e-1)
Module size	37 genes
NF	0.57
%ile	76.7

Co-expression analysis

Gene ID Os10g0530500 Gene name Homology with ArabidopsisSimilar to At3g09270: ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) (HF=1e-1) Module size 37 genes NF 0.57 %ile 76.7

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0530500

Gene name
Homology with Arabidopsis Similar to At3g09270: ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) (HF=1e-1)

Module size 37 genes

NF 0.57

%ile 76.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays