CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0529700

Gene name
Homology with Arabidopsis Similar to At5g19880: peroxidase, putative (HF=6e-1)

Module size 31 genes

NF 0.46

%ile 58.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 0.84 Os10g0529700 AF402795.1 - - 6e-1 At5g19880 peroxidase, putative O.I. H.G. S.X.
0.64 83.4 0.90 Os03g0594900 AK069017.1 - Cytochrome P450 family protein 4e+0 At5g46030 unknown protein O.I. H.G. S.X.
0.64 83.4 0.90 Os04g0578200 AK073300.1 - Conserved hypothetical protein 6e-1 At3g12977 DNA binding O.I. H.G. S.X.
0.59 78.0 0.92 Os02g0704300 AK058932.1 - Hypothetical protein 3e-6 At5g35970 DNA-binding protein, putative O.I. H.G. S.X.
0.57 77.0 0.89 Os01g0700100 AK059965.1 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) O.I. H.G. S.X.
0.55 73.7 0.90 Os03g0228200 9631.m01196 - Conserved hypothetical protein 2e-2 At2g23790 unknown protein O.I. H.G. S.X.
0.55 73.7 0.85 Os01g0175700 CB624018 - HCO3-transporter domain containing protein 2e-5 At1g15460 BOR4 (REQUIRES HIGH BORON 4) O.I. H.G. S.X.
0.55 73.7 0.86 Os02g0207400 9630.m01045 - - 2e-1 At4g34135 UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2) O.I. H.G. S.X.
0.54 71.9 0.89 Os01g0804400 AK070931.1 - Cytochrome P450 family protein 2e-1 At1g34540 CYP94D1 O.I. H.G. S.X.
0.53 71.3 0.91 Os08g0139700 CB617889 - Terpene synthase-like domain containing protein 2e+0 At1g72416 heat shock protein binding O.I. H.G. S.X.
0.52 69.6 0.89 Os01g0823600 CF305219 - Conserved hypothetical protein 1e+0 At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein O.I. H.G. S.X.
0.49 64.4 0.95 Os05g0582300 AK101790.1 - Solanesyl diphosphate synthase 2e-17 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) O.I. H.G. S.X.
0.48 63.7 0.88 Os01g0362100 AK065319.1 - Esterase/lipase/thioesterase domain containingprotein 3e-4 At1g54570 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.47 62.3 0.89 Os11g0107400 AK065945.1 - Nodulin-like domain containing protein 1e-9 At5g45275 - O.I. H.G. S.X.
0.46 60.9 0.93 Os01g0666600 CF325024 - Conserved hypothetical protein 5e+0 At3g58380 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.44 58.1 0.95 Os08g0432500 AK106170.1 - ATP-dependent Clp protease adaptor protein ClpSfamily protein 3e-2 At3g61678 unknown protein O.I. H.G. S.X.
0.42 53.9 0.86 Os11g0660000 AK066709.1 - Sodium/calcium exchanger membrane region domaincontaining protein 1e-12 At2g47600 ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER) O.I. H.G. S.X.
0.41 52.4 0.87 Os06g0318600 AK069141.1 - Peptidase S41A, C-terminal protease family protein 1e-18 At3g57680 peptidase S41 family protein O.I. H.G. S.X.
0.38 46.9 0.89 Os02g0194700 AK071915.1 - Plant lipoxygenase family protein 4e-1 At5g66010 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.36 44.0 0.88 Os03g0598100 AK071010.1 - Amino acid-binding ACT domain containing protein 2e-5 At1g69040 ACR4 (ACT REPEAT 4) O.I. H.G. S.X.
0.36 44.0 0.89 Os02g0644900 AK066709.1 - Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2 1e-12 At2g47600 ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER) O.I. H.G. S.X.
0.36 44.0 0.89 Os02g0498300 AK070515.1 - Protein of unknown function DUF803 family protein 8e-7 At3g23870 permease-related O.I. H.G. S.X.
0.35 41.7 0.92 Os04g0583000 AK065769.1 - TPR-like domain containing protein 7e-2 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) O.I. H.G. S.X.
0.35 41.7 0.94 Os04g0657500 AK066638.1 - Lipase, class 3 family protein 1e+0 At3g17100 transcription factor O.I. H.G. S.X.
0.34 40.0 0.93 Os12g0105300 AK072914.1 - Conserved hypothetical protein 1e-16 At3g25690 CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) O.I. H.G. S.X.
0.31 34.5 0.94 Os12g0626400 AK063967.1 - Squalene/phytoene synthase family protein 7e-10 At5g17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase O.I. H.G. S.X.
0.29 31.1 0.94 Os11g0603200 AK059060.1 - ABCF-type protein 1e-19 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) O.I. H.G. S.X.
0.29 31.1 0.93 Os07g0614000 AK109489.1 - Strictosidine synthase family protein 3e+0 At5g66090 unknown protein O.I. H.G. S.X.
0.26 25.6 0.94 Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein O.I. H.G. S.X.
0.26 25.6 0.90 Os04g0613300 AK065653.1 - Conserved hypothetical protein 2e-10 At1g16320 unknown protein O.I. H.G. S.X.
0.25 24.1 0.95 Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.86	96.4	0.84	Os10g0529700	AF402795.1	-	-	6e-1	At5g19880	peroxidase, putative	O.I.	H.G.	S.X.
0.64	83.4	0.90	Os03g0594900	AK069017.1	-	Cytochrome P450 family protein	4e+0	At5g46030	unknown protein	O.I.	H.G.	S.X.
0.64	83.4	0.90	Os04g0578200	AK073300.1	-	Conserved hypothetical protein	6e-1	At3g12977	DNA binding	O.I.	H.G.	S.X.
0.59	78.0	0.92	Os02g0704300	AK058932.1	-	Hypothetical protein	3e-6	At5g35970	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.57	77.0	0.89	Os01g0700100	AK059965.1	-	MtN3 and saliva related transmembrane proteinfamily protein	4e-2	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	O.I.	H.G.	S.X.
0.55	73.7	0.90	Os03g0228200	9631.m01196	-	Conserved hypothetical protein	2e-2	At2g23790	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.85	Os01g0175700	CB624018	-	HCO3-transporter domain containing protein	2e-5	At1g15460	BOR4 (REQUIRES HIGH BORON 4)	O.I.	H.G.	S.X.
0.55	73.7	0.86	Os02g0207400	9630.m01045	-	-	2e-1	At4g34135	UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2)	O.I.	H.G.	S.X.
0.54	71.9	0.89	Os01g0804400	AK070931.1	-	Cytochrome P450 family protein	2e-1	At1g34540	CYP94D1	O.I.	H.G.	S.X.
0.53	71.3	0.91	Os08g0139700	CB617889	-	Terpene synthase-like domain containing protein	2e+0	At1g72416	heat shock protein binding	O.I.	H.G.	S.X.
0.52	69.6	0.89	Os01g0823600	CF305219	-	Conserved hypothetical protein	1e+0	At5g06760	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	O.I.	H.G.	S.X.
0.49	64.4	0.95	Os05g0582300	AK101790.1	-	Solanesyl diphosphate synthase	2e-17	At1g17050	SPS2 (Solanesyl diphosphate synthase 2)	O.I.	H.G.	S.X.
0.48	63.7	0.88	Os01g0362100	AK065319.1	-	Esterase/lipase/thioesterase domain containingprotein	3e-4	At1g54570	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.47	62.3	0.89	Os11g0107400	AK065945.1	-	Nodulin-like domain containing protein	1e-9	At5g45275	-	O.I.	H.G.	S.X.
0.46	60.9	0.93	Os01g0666600	CF325024	-	Conserved hypothetical protein	5e+0	At3g58380	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os08g0432500	AK106170.1	-	ATP-dependent Clp protease adaptor protein ClpSfamily protein	3e-2	At3g61678	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.86	Os11g0660000	AK066709.1	-	Sodium/calcium exchanger membrane region domaincontaining protein	1e-12	At2g47600	ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)	O.I.	H.G.	S.X.
0.41	52.4	0.87	Os06g0318600	AK069141.1	-	Peptidase S41A, C-terminal protease family protein	1e-18	At3g57680	peptidase S41 family protein	O.I.	H.G.	S.X.
0.38	46.9	0.89	Os02g0194700	AK071915.1	-	Plant lipoxygenase family protein	4e-1	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.36	44.0	0.88	Os03g0598100	AK071010.1	-	Amino acid-binding ACT domain containing protein	2e-5	At1g69040	ACR4 (ACT REPEAT 4)	O.I.	H.G.	S.X.
0.36	44.0	0.89	Os02g0644900	AK066709.1	-	Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2	1e-12	At2g47600	ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)	O.I.	H.G.	S.X.
0.36	44.0	0.89	Os02g0498300	AK070515.1	-	Protein of unknown function DUF803 family protein	8e-7	At3g23870	permease-related	O.I.	H.G.	S.X.
0.35	41.7	0.92	Os04g0583000	AK065769.1	-	TPR-like domain containing protein	7e-2	At4g02380	SAG21 (SENESCENCE-ASSOCIATED GENE 21)	O.I.	H.G.	S.X.
0.35	41.7	0.94	Os04g0657500	AK066638.1	-	Lipase, class 3 family protein	1e+0	At3g17100	transcription factor	O.I.	H.G.	S.X.
0.34	40.0	0.93	Os12g0105300	AK072914.1	-	Conserved hypothetical protein	1e-16	At3g25690	CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	O.I.	H.G.	S.X.
0.31	34.5	0.94	Os12g0626400	AK063967.1	-	Squalene/phytoene synthase family protein	7e-10	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os11g0603200	AK059060.1	-	ABCF-type protein	1e-19	At5g64840	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os07g0614000	AK109489.1	-	Strictosidine synthase family protein	3e+0	At5g66090	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os03g0744700	AK071178.1	-	Conserved hypothetical protein	4e-2	At1g62250	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.90	Os04g0613300	AK065653.1	-	Conserved hypothetical protein	2e-10	At1g16320	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.95	Os04g0657300	CB624212	-	Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)	2e-1	At1g68552	CPuORF53 (Conserved peptide upstream open reading frame 53)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.3 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
15.7	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6	98.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.3	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
0.029 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.025 2 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

SF	Genes	GO ID	Process Name
0.049	1	GO:0008299	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
0.029	1	GO:0006629	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.025	2	GO:0009058	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os10g0529700
Gene name
Homology with Arabidopsis	Similar to At5g19880: peroxidase, putative (HF=6e-1)
Module size	31 genes
NF	0.46
%ile	58.5

Co-expression analysis

Gene ID Os10g0529700 Gene name Homology with ArabidopsisSimilar to At5g19880: peroxidase, putative (HF=6e-1) Module size 31 genes NF 0.46 %ile 58.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0529700

Gene name
Homology with Arabidopsis Similar to At5g19880: peroxidase, putative (HF=6e-1)

Module size 31 genes

NF 0.46

%ile 58.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays