CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0528300

Gene name
Homology with Arabidopsis Similar to At3g43800: ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) (HF=2e-4)

Module size 6 genes

NF 0.79

%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.86 Os10g0528300 AF309378.1 - Tau class GST protein 4 2e-4 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) O.I. H.G. S.X.
0.83 95.8 0.78 Os09g0518200 AK064395.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22340 AtUGT85A7 (UDP-glucosyl transferase 85A7) O.I. H.G. S.X.
0.83 95.8 0.80 Os09g0367700 AF309377.1 - GST6 protein (EC 2.5.1.18) 5e-4 At1g27130 ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13) O.I. H.G. S.X.
0.67 87.2 0.81 Os10g0530900 AF309376.1 - Glutathione S-transferase GST 30 (EC 2.5.1.18) 2e+0 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.57 77.0 0.82 Os01g0638000 AK103824.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22380 AtUGT85A3 (UDP-glucosyl transferase 85A3) O.I. H.G. S.X.
0.50 68.0 0.85 Os03g0154000 AK103088.1 - Aromatic-ring hydroxylase family protein 3e+0 At3g13882 structural constituent of ribosome O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.7	0.75	Os01g0597800	AK063325.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-5	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	O.I.	H.G.	S.X.
0.60	79.7	0.84	Os10g0528400	AF309379.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	1e-1	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.
0.56	76.3	0.77	Os04g0339400	AK103553.1	-	Aldo/keto reductase family protein	1e-5	At1g60690	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.56	76.3	0.80	Os10g0527400	D10861.1	-	Glutathione S-transferase TSI-1 (EC 2.5.1.18)(Glutathione S- transferase 1)	5e-1	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	O.I.	H.G.	S.X.
0.44	58.1	0.75	Os03g0283200	AF237487.2	-	IN2-1 protein	2e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.
0.42	53.9	0.79	Os02g0755900	AK104985.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	8e-1	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	O.I.	H.G.	S.X.
0.42	53.9	0.81	Os01g0627400	AK074025.1	-	Cytochrome P450 monooxygenase CYP72A5 (Fragment)	4e+0	At3g14630	CYP72A9	O.I.	H.G.	S.X.
0.36	44.0	0.71	Os06g0215900	AK105590.1	-	Oxo-phytodienoic acid reductase	4e-2	At1g09400	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.
0.35	41.7	0.75	Os07g0638100	AK100429.1	-	TolB, C-terminal domain containing protein	2e-5	At4g01870	tolB protein-related	O.I.	H.G.	S.X.
0.32	36.3	0.57	Os10g0481300	CF291582	-	Glutathione S-transferase GSTU31 (Fragment)	3e-2	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	O.I.	H.G.	S.X.
0.30	32.7	0.77	Os01g0934800	Z34270.1	-	Alpha/beta hydrolase fold domain containingprotein	1e-1	At2g23580	MES4 (METHYL ESTERASE 4)	O.I.	H.G.	S.X.
0.29	31.1	0.77	Os01g0627600	AK101667.1	-	Cytochrome P450 monooxygenase CYP72A5 (Fragment)	1e-2	At3g14630	CYP72A9	O.I.	H.G.	S.X.
0.26	25.6	0.75	Os08g0156100	AK063249.1	-	Conserved hypothetical protein	1e+0	At3g23170	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.66	Os01g0947000	AK063953.1	-	Beta-1,3-glucanase precursor	2e-2	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.5 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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