CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0528300

Gene name
Homology with Arabidopsis Similar to At3g43800: ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) (HF=2e-4)

Module size 6 genes

NF 0.79

%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.86 Os10g0528300 AF309378.1 - Tau class GST protein 4 2e-4 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) O.I. H.G. S.X.
0.83 95.8 0.78 Os09g0518200 AK064395.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22340 AtUGT85A7 (UDP-glucosyl transferase 85A7) O.I. H.G. S.X.
0.83 95.8 0.80 Os09g0367700 AF309377.1 - GST6 protein (EC 2.5.1.18) 5e-4 At1g27130 ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13) O.I. H.G. S.X.
0.67 87.2 0.81 Os10g0530900 AF309376.1 - Glutathione S-transferase GST 30 (EC 2.5.1.18) 2e+0 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.57 77.0 0.82 Os01g0638000 AK103824.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22380 AtUGT85A3 (UDP-glucosyl transferase 85A3) O.I. H.G. S.X.
0.50 68.0 0.85 Os03g0154000 AK103088.1 - Aromatic-ring hydroxylase family protein 3e+0 At3g13882 structural constituent of ribosome O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.86	Os10g0528300	AF309378.1	-	Tau class GST protein 4	2e-4	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.
0.83	95.8	0.78	Os09g0518200	AK064395.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-2	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	O.I.	H.G.	S.X.
0.83	95.8	0.80	Os09g0367700	AF309377.1	-	GST6 protein (EC 2.5.1.18)	5e-4	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.
0.67	87.2	0.81	Os10g0530900	AF309376.1	-	Glutathione S-transferase GST 30 (EC 2.5.1.18)	2e+0	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.57	77.0	0.82	Os01g0638000	AK103824.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-2	At1g22380	AtUGT85A3 (UDP-glucosyl transferase 85A3)	O.I.	H.G.	S.X.
0.50	68.0	0.85	Os03g0154000	AK103088.1	-	Aromatic-ring hydroxylase family protein	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.5 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
63.5	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.3	98.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.1	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM195220	stigma 3, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.13591.1.S1_at, orthologous to the query gene, Os10g0528300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 86.1 Zm.13591.1.S1_at At3g43800 glutathione transferase42 - 2e+0 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.68 86.1 Zm.4764.1.S1_at At3g43800 vacuolar protein sorting 37C - 2e-3 At2g36680 - O.I. H.G. S.X.
0.67 85.8 Zm.15154.1.A1_at At3g43800 - - 2e-6 At2g42380 bZIP transcription factor family protein O.I. H.G. S.X.
0.67 85.8 Zm.8466.1.S1_at At3g43800 macrophage migration inhibitory factor - 4e-11 At5g01650 macrophage migration inhibitory factor family protein / MIF family protein O.I. H.G. S.X.
0.54 69.8 Zm.3699.5.A1_at At3g43800 - - 3e-2 At5g09995 unknown protein O.I. H.G. S.X.
0.54 69.8 Zm.4385.1.S1_at At3g43800 small nuclear ribonucleoprotein-associated protein B - 3e-15 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.
0.51 66.4 Zm.11605.1.A1_at At3g43800 - - 4e+0 At4g11930 unknown protein O.I. H.G. S.X.
0.50 65.7 Zm.3222.1.A1_at At3g43800 - - 7e+0 At4g27890 nuclear movement family protein O.I. H.G. S.X.
0.49 61.9 Zm.14136.1.A1_at At3g43800 hypothetical protein LOC100193727 - 1e-21 At1g27340 F-box family protein O.I. H.G. S.X.
0.48 61.3 Zm.1482.2.A1_at At3g43800 hypothetical protein LOC100279242 - 7e+0 At5g17280 unknown protein O.I. H.G. S.X.
0.46 58.4 Zm.4755.1.A1_at At3g43800 - - 8e-9 At5g14040 mitochondrial phosphate transporter O.I. H.G. S.X.
0.45 56.4 Zm.6454.1.A1_at At3g43800 PP1/PP2A phosphatases pleiotropic regulator PRL1 - 9e-29 At4g15900 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) O.I. H.G. S.X.
0.44 55.7 Zm.5280.1.S1_at At3g43800 - - 2e-8 At1g76760 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) O.I. H.G. S.X.
0.44 55.7 Zm.628.1.A1_at At3g43800 glutathione S-transferase12 - 6e-1 At3g21960 - O.I. H.G. S.X.
0.42 51.3 Zm.540.1.A1_at At3g43800 glutathione transferase9 - 5e-1 At2g01640 unknown protein O.I. H.G. S.X.
0.42 51.3 Zm.12269.2.A1_a_at At3g43800 hypothetical protein LOC100193070 - 2e-4 At3g14130 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative O.I. H.G. S.X.
0.40 48.5 Zm.4002.1.A1_at At3g43800 hypothetical LOC542196 - 5e-28 At2g19740 60S ribosomal protein L31 (RPL31A) O.I. H.G. S.X.
0.39 45.6 Zm.3633.2.S1_x_at At3g43800 APx1 - Cytosolic Ascorbate Peroxidase - 3e-28 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.
0.36 41.3 Zm.8233.1.A1_at At3g43800 - - 1e-2 At4g31580 SRZ-22 O.I. H.G. S.X.
0.36 41.3 Zm.13763.1.A1_at At3g43800 hypothetical protein LOC100279845 - 2e-4 At4g38690 1-phosphatidylinositol phosphodiesterase-related O.I. H.G. S.X.
0.33 36.0 Zm.14687.1.S1_s_at At3g43800 hypothetical protein LOC100272479 - 3e-1 At2g15770 glycine-rich protein O.I. H.G. S.X.
0.32 33.4 Zm.4883.1.A1_at At3g43800 Hypothetical protein LOC100216906 - 2e-5 At1g07530 SCL14 (SCARECROW-LIKE 14) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.68	86.1	Zm.13591.1.S1_at	At3g43800	glutathione transferase42	-	2e+0	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.
0.68	86.1	Zm.4764.1.S1_at	At3g43800	vacuolar protein sorting 37C	-	2e-3	At2g36680	-	O.I.	H.G.	S.X.
0.67	85.8	Zm.15154.1.A1_at	At3g43800	-	-	2e-6	At2g42380	bZIP transcription factor family protein	O.I.	H.G.	S.X.
0.67	85.8	Zm.8466.1.S1_at	At3g43800	macrophage migration inhibitory factor	-	4e-11	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.
0.54	69.8	Zm.3699.5.A1_at	At3g43800	-	-	3e-2	At5g09995	unknown protein	O.I.	H.G.	S.X.
0.54	69.8	Zm.4385.1.S1_at	At3g43800	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	O.I.	H.G.	S.X.
0.51	66.4	Zm.11605.1.A1_at	At3g43800	-	-	4e+0	At4g11930	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	Zm.3222.1.A1_at	At3g43800	-	-	7e+0	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.
0.49	61.9	Zm.14136.1.A1_at	At3g43800	hypothetical protein LOC100193727	-	1e-21	At1g27340	F-box family protein	O.I.	H.G.	S.X.
0.48	61.3	Zm.1482.2.A1_at	At3g43800	hypothetical protein LOC100279242	-	7e+0	At5g17280	unknown protein	O.I.	H.G.	S.X.
0.46	58.4	Zm.4755.1.A1_at	At3g43800	-	-	8e-9	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.
0.45	56.4	Zm.6454.1.A1_at	At3g43800	PP1/PP2A phosphatases pleiotropic regulator PRL1	-	9e-29	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.
0.44	55.7	Zm.5280.1.S1_at	At3g43800	-	-	2e-8	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	O.I.	H.G.	S.X.
0.44	55.7	Zm.628.1.A1_at	At3g43800	glutathione S-transferase12	-	6e-1	At3g21960	-	O.I.	H.G.	S.X.
0.42	51.3	Zm.540.1.A1_at	At3g43800	glutathione transferase9	-	5e-1	At2g01640	unknown protein	O.I.	H.G.	S.X.
0.42	51.3	Zm.12269.2.A1_a_at	At3g43800	hypothetical protein LOC100193070	-	2e-4	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.
0.40	48.5	Zm.4002.1.A1_at	At3g43800	hypothetical LOC542196	-	5e-28	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.
0.39	45.6	Zm.3633.2.S1_x_at	At3g43800	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.
0.36	41.3	Zm.8233.1.A1_at	At3g43800	-	-	1e-2	At4g31580	SRZ-22	O.I.	H.G.	S.X.
0.36	41.3	Zm.13763.1.A1_at	At3g43800	hypothetical protein LOC100279845	-	2e-4	At4g38690	1-phosphatidylinositol phosphodiesterase-related	O.I.	H.G.	S.X.
0.33	36.0	Zm.14687.1.S1_s_at	At3g43800	hypothetical protein LOC100272479	-	3e-1	At2g15770	glycine-rich protein	O.I.	H.G.	S.X.
0.32	33.4	Zm.4883.1.A1_at	At3g43800	Hypothetical protein LOC100216906	-	2e-5	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Os10g0528300
Gene name
Homology with Arabidopsis	Similar to At3g43800: ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) (HF=2e-4)
Module size	6 genes
NF	0.79
%ile	97.8

Co-expression analysis

Gene ID Os10g0528300 Gene name Homology with ArabidopsisSimilar to At3g43800: ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) (HF=2e-4) Module size 6 genes NF 0.79 %ile 97.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os10g0528300

Gene name
Homology with Arabidopsis Similar to At3g43800: ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) (HF=2e-4)

Module size 6 genes

NF 0.79

%ile 97.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera