CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0528300

Gene name
Homology with Arabidopsis Similar to At3g43800: ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) (HF=2e-4)

Module size 6 genes

NF 0.79

%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.86 Os10g0528300 AF309378.1 - Tau class GST protein 4 2e-4 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) O.I. H.G. S.X.
0.83 95.8 0.78 Os09g0518200 AK064395.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22340 AtUGT85A7 (UDP-glucosyl transferase 85A7) O.I. H.G. S.X.
0.83 95.8 0.80 Os09g0367700 AF309377.1 - GST6 protein (EC 2.5.1.18) 5e-4 At1g27130 ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13) O.I. H.G. S.X.
0.67 87.2 0.81 Os10g0530900 AF309376.1 - Glutathione S-transferase GST 30 (EC 2.5.1.18) 2e+0 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.57 77.0 0.82 Os01g0638000 AK103824.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22380 AtUGT85A3 (UDP-glucosyl transferase 85A3) O.I. H.G. S.X.
0.50 68.0 0.85 Os03g0154000 AK103088.1 - Aromatic-ring hydroxylase family protein 3e+0 At3g13882 structural constituent of ribosome O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.5 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.225564.1.S1_at, orthologous to the query gene, Os10g0528300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 PtpAffx.225564.1.S1_at At3g43800 hypothetical protein - 9e-3 At2g29440 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) O.I. H.G. S.X.
0.22 38.3 PtpAffx.216295.1.S1_s_at At3g43800 amino acid permease /// amino acid permease - 7e-3 At5g09220 AAP2 (AMINO ACID PERMEASE 2) O.I. H.G. S.X.
0.07 11.6 PtpAffx.201249.1.S1_at At3g43800 hypothetical protein - 1e-55 At1g30450 CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1) O.I. H.G. S.X.
0.04 6.9 PtpAffx.206616.1.S1_s_at At3g43800 hypothetical protein - 0 At3g43300 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7) O.I. H.G. S.X.
0.03 5.2 PtpAffx.200412.1.S1_at At3g43800 hypothetical protein - 0 At4g11380 beta-adaptin, putative O.I. H.G. S.X.
0.03 5.2 PtpAffx.203987.1.S1_x_at At3g43800 hypothetical protein - 6e-39 At1g11050 protein kinase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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