CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0524900

Gene name
Homology with Arabidopsis Similar to At2g21660: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) (HF=3e-1)

Module size 7 genes

NF 0.76

%ile 96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.98 Os10g0524900 9638.m03422 - - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.92 99.1 0.98 Os10g0399600 NM_196369.1 - - 9e-1 At3g25099 unknown protein O.I. H.G. S.X.
0.92 99.1 0.98 Os12g0559400 9640.m03616 - Pib 5e+0 At5g57655 xylose isomerase family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os09g0272100 9637.m00753 - - 4e+0 At3g45000 VPS24.2 O.I. H.G. S.X.
0.67 87.2 0.98 Os10g0349800 9638.m01734 - - 1e+1 At5g19090 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.99 Os12g0206200 9640.m00984 - - 5e+0 At5g53592 - O.I. H.G. S.X.
0.57 77.0 0.98 Os06g0599700 9634.m03815 - - 2e+0 At5g23100 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
90.1 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
53.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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