CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0516300

Gene name
Homology with Arabidopsis Similar to At2g43400: ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) (HF=8e-17)

Module size 6 genes

NF 0.22

%ile 20.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.90 Os10g0516300 CB620164 - Electron transfer flavoprotein-ubiquinoneoxidoreductase, mitochondrial precursor (EC 1.5.5.1)(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETFdehydrogenase) (Electron-transferring- flavoproteindehydrogenase). Splice isoform 2 8e-17 At2g43400 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) O.I. H.G. S.X.
0.57 77.0 0.90 Os12g0605800 AK121511.1 - Methylcrotonyl-CoA carboxylase alpha chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alphasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligasealpha subunit) 2e-15 At1g03090 MCCA O.I. H.G. S.X.
0.50 68.0 0.93 Os08g0424200 AK060716.1 - Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit) 2e-26 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) O.I. H.G. S.X.
0.13 8.2 0.91 Os02g0693200 AK071581.1 - DnaJ homolog subfamily B member 5 (Heat shockprotein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)(Hsp40-2) 2e+0 At3g44428 - O.I. H.G. S.X.
0.12 7.2 0.90 Os03g0689900 AK111437.1 - TPR-like domain containing protein 2e-4 At1g27110 binding O.I. H.G. S.X.
0.12 7.2 0.90 Os06g0153900 AK101884.1 - Thiol methyltransferase 2 4e-2 At2g43910 thiol methyltransferase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.5 97.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM387561 Transgenic line 22, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
5.7 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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