CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0512700

Gene name
Homology with Arabidopsis Similar to At4g34660: SH3 domain-containing protein 2 (SH3P2) (HF=3e-9)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.96 Os10g0512700 AK067223.1 - SH3 domain-containing protein 3 3e-9 At4g34660 SH3 domain-containing protein 2 (SH3P2) O.I. H.G. S.X.
0.73 91.1 0.97 Os08g0162000 BX901451 - Nonaspanin (TM9SF) family protein 9e-35 At2g01970 endomembrane protein 70, putative O.I. H.G. S.X.
0.44 58.1 0.97 Os05g0154700 AK064328.1 - Kinesin heavy chain (Fragment) 5e-18 At3g16630 KINESIN-13A O.I. H.G. S.X.
0.44 58.1 0.97 Os09g0541900 AB031299.1 - Proteasome component region PCI domain containingprotein 1e-24 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) O.I. H.G. S.X.
0.40 51.1 0.97 Os03g0113800 AK065925.1 - ARM repeat fold domain containing protein 6e-11 At5g41950 binding O.I. H.G. S.X.
0.25 24.1 0.97 Os02g0722300 AK064958.1 - Nonaspanin (TM9SF) family protein 6e-21 At4g12650 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	73.7	0.96	Os10g0512700	AK067223.1	-	SH3 domain-containing protein 3	3e-9	At4g34660	SH3 domain-containing protein 2 (SH3P2)	O.I.	H.G.	S.X.
0.73	91.1	0.97	Os08g0162000	BX901451	-	Nonaspanin (TM9SF) family protein	9e-35	At2g01970	endomembrane protein 70, putative	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os05g0154700	AK064328.1	-	Kinesin heavy chain (Fragment)	5e-18	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os09g0541900	AB031299.1	-	Proteasome component region PCI domain containingprotein	1e-24	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os03g0113800	AK065925.1	-	ARM repeat fold domain containing protein	6e-11	At5g41950	binding	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os02g0722300	AK064958.1	-	Nonaspanin (TM9SF) family protein	6e-21	At4g12650	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.95	Os01g0694900	NM_192176.1	-	Epsin, N-terminal domain containing protein	1e-21	At5g57200	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.60	79.7	0.96	Os06g0156900	AK110688.1	-	Glycosyl transferase, family 31 protein	1e-18	At1g53290	galactosyltransferase family protein	O.I.	H.G.	S.X.
0.60	79.7	0.97	Os01g0714900	AK111495.1	-	RAB7A	7e-22	At4g09720	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.
0.53	71.3	0.97	Os12g0238100	AK064983.1	-	Exocyst complex component Sec10 family protein	6e-40	At5g12370	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os11g0198100	AK070130.1	-	Protein of unknown function DUF616 family protein	3e-8	At1g34550	EMB2756 (EMBRYO DEFECTIVE 2756)	O.I.	H.G.	S.X.
0.48	63.7	0.95	Os03g0810800	AK070201.1	-	Short-chain alcohol dehydrogenase	3e+0	At2g16340	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os05g0178400	AK102847.1	-	Protein phosphatase 2A B'kappa subunit	3e-4	At3g09880	ATB' BETA	O.I.	H.G.	S.X.
0.44	58.1	0.94	Os09g0372700	AK067111.1	-	ASC1 (Alternaria stem canker resistance protein)	3e-4	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os01g0223600	AK110821.1	-	Protein kinase domain containing protein	1e-3	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os02g0662200	AK063236.1	-	YbaK/prolyl-tRNA synthetase associated regiondomain containing protein	1e-4	At4g16510	YbaK/prolyl-tRNA synthetase-related	O.I.	H.G.	S.X.
0.40	51.1	0.92	Os04g0169500	AK062453.1	-	Hypothetical protein	1e+0	At5g17150	-	O.I.	H.G.	S.X.
0.40	51.1	0.93	Os05g0593200	AK059115.1	-	Hypothetical protein	4e-1	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os03g0198500	AK104430.1	-	Eukaryotic protein of unknown function DUF862family protein	1e-11	At1g47740	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os07g0572600	AK109147.1	-	Inorganic pyrophosphatase family protein	7e-14	At1g53770	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os10g0545200	AK061779.1	-	Sterol desaturase family protein	1e-8	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os02g0465400	AK100199.1	-	7-dehydrocholesterol reductase (EC 1.3.1.21)(7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5protein)	9e-32	At1g50430	DWF5 (DWARF 5)	O.I.	H.G.	S.X.
0.35	41.7	0.94	Os10g0512800	BP184837	-	ab initio prediction with EST support	2e-49	At4g39050	kinesin-related protein (MKRP2)	O.I.	H.G.	S.X.
0.35	41.7	0.96	Os03g0246800	AK070145.1	-	Guanine nucleotide exchange factor-like protein	1e-39	At3g60860	guanine nucleotide exchange family protein	O.I.	H.G.	S.X.
0.35	41.7	0.93	Os08g0374800	AB096863.1	-	UDP-galactose 4-epimerase-like protein	3e-13	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os05g0373400	AK073796.1	-	-	3e-16	At1g03457	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os04g0599900	AK121748.1	-	ENTH1 protein (Fragment)	2e-5	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os03g0737800	AK103066.1	-	-	2e-21	At4g02030	-	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os02g0700600	AK100966.1	-	GAMYB-binding protein	4e-9	At5g45430	protein kinase, putative	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os03g0713100	BE040116	-	Dynamin family protein	2e-6	At1g14830	ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os03g0336300	AK068503.1	-	Peptidase M16, C-terminal domain containingprotein	1e-13	At1g06900	catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os07g0690400	AK068590.1	-	Protein phosphatase 2C-like	3e-28	At1g68410	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os01g0732000	AK062498.1	-	-	6e-5	At5g41685	mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os07g0200000	AK102401.1	-	Conserved hypothetical protein	6e-6	At5g49830	-	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os02g0738900	AK099699.1	-	Dynamin-like protein 6	4e-26	At1g59610	ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)	O.I.	H.G.	S.X.
0.28	31.1	0.92	Os08g0127500	AK071322.1	-	Protein of unknown function DUF212 family protein	7e-6	At1g67600	-	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os01g0653800	AK111531.1	-	WD40-like domain containing protein	1e-32	At5g24710	-	O.I.	H.G.	S.X.
0.27	27.5	0.93	Os04g0283900	AK065012.1	-	Conserved hypothetical protein	2e+0	At5g18920	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os01g0978000	CB678991	-	Uncoupling protein	2e-7	At3g54110	PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os02g0105200	AK063525.1	-	Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12)	3e-19	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os03g0817900	AK071479.1	-	-	7e-2	At2g40320	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os04g0670000	AK071792.1	-	Reticulon family protein	6e-1	At3g19460	reticulon family protein (RTNLB11)	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os07g0508300	AK073874.1	-	SH3 domain-containing protein 3	9e-4	At4g18060	clathrin binding	O.I.	H.G.	S.X.
0.25	24.1	0.94	Os03g0713600	AK074014.1	-	Ferritin/ribonucleotide reductase-like familyprotein	8e-10	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os06g0669500	9634.m04454	-	Hypothetical protein	3e-17	At5g51430	EYE (EMBRYO YELLOW)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.4 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.9	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.4	97.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9	97.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3	96.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2	96.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0512700
Gene name
Homology with Arabidopsis	Similar to At4g34660: SH3 domain-containing protein 2 (SH3P2) (HF=3e-9)
Module size	6 genes
NF	0.50
%ile	66.5

Co-expression analysis

Gene ID Os10g0512700 Gene name Homology with ArabidopsisSimilar to At4g34660: SH3 domain-containing protein 2 (SH3P2) (HF=3e-9) Module size 6 genes NF 0.50 %ile 66.5

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0512700

Gene name
Homology with Arabidopsis Similar to At4g34660: SH3 domain-containing protein 2 (SH3P2) (HF=3e-9)

Module size 6 genes

NF 0.50

%ile 66.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays