CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0512700

Gene name
Homology with Arabidopsis Similar to At4g34660: SH3 domain-containing protein 2 (SH3P2) (HF=3e-9)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.96 Os10g0512700 AK067223.1 - SH3 domain-containing protein 3 3e-9 At4g34660 SH3 domain-containing protein 2 (SH3P2) O.I. H.G. S.X.
0.73 91.1 0.97 Os08g0162000 BX901451 - Nonaspanin (TM9SF) family protein 9e-35 At2g01970 endomembrane protein 70, putative O.I. H.G. S.X.
0.44 58.1 0.97 Os05g0154700 AK064328.1 - Kinesin heavy chain (Fragment) 5e-18 At3g16630 KINESIN-13A O.I. H.G. S.X.
0.44 58.1 0.97 Os09g0541900 AB031299.1 - Proteasome component region PCI domain containingprotein 1e-24 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) O.I. H.G. S.X.
0.40 51.1 0.97 Os03g0113800 AK065925.1 - ARM repeat fold domain containing protein 6e-11 At5g41950 binding O.I. H.G. S.X.
0.25 24.1 0.97 Os02g0722300 AK064958.1 - Nonaspanin (TM9SF) family protein 6e-21 At4g12650 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.4 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.38736.1.S1_a_at, orthologous to the query gene, Os10g0512700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 PtpAffx.38736.1.S1_a_at At4g34660 hypothetical protein - 6e-46 At4g34660 SH3 domain-containing protein 2 (SH3P2) O.I. H.G. S.X.
0.71 92.6 PtpAffx.132923.1.S1_at At4g34660 hypothetical protein - 1e-38 At4g39910 ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) O.I. H.G. S.X.
0.67 91.1 Ptp.4292.2.S1_s_at At4g34660 hypothetical protein - 2e-19 At3g11530 vacuolar protein sorting 55 family protein / VPS55 family protein O.I. H.G. S.X.
0.67 91.1 PtpAffx.132923.1.S1_s_at At4g34660 hypothetical protein - 1e-38 At4g39910 ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) O.I. H.G. S.X.
0.67 91.1 PtpAffx.146077.1.S1_at At4g34660 hypothetical protein - 4e-1 At2g16890 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.53 80.5 PtpAffx.63140.2.S1_s_at At4g34660 hypothetical protein - 7e-11 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.
0.36 61.6 Ptp.825.2.S1_at At4g34660 - - 4e-26 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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