CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0510400

Gene name
Homology with Arabidopsis Similar to At1g33170: dehydration-responsive family protein (HF=1e-3)

Module size 7 genes

NF 0.14

%ile 11.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.92 Os10g0510400 AK100601.1 - Putative methyltransferase DUF248 family protein 1e-3 At1g33170 dehydration-responsive family protein O.I. H.G. S.X.
0.40 51.1 0.94 Os08g0525000 AK103220.1 - Ras GTPase family protein 1e-41 At2g43130 ARA4 O.I. H.G. S.X.
0.33 38.8 0.95 Os01g0883900 AK119636.1 - Putative methyltransferase DUF248 family protein 2e-12 At5g64030 dehydration-responsive protein-related O.I. H.G. S.X.
0.27 27.5 0.93 Os05g0218400 CB680782 - Protein kinase domain containing protein 4e-18 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) O.I. H.G. S.X.
0.23 21.2 0.93 Os03g0300000 AK060863.1 - The start codon is not identified. 1e-14 At3g62720 XT1 (XYLOSYLTRANSFERASE 1) O.I. H.G. S.X.
0.13 8.2 0.93 Os10g0477100 AK067258.1 - Ankyrin-like protein 5e-43 At4g14360 dehydration-responsive protein-related O.I. H.G. S.X.
0.04 2.0 0.93 Os06g0561200 AK120422.1 - Potassium/proton antiporter-like protein 5e-31 At2g19600 ATKEA4 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
11.9 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
11.0 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.036 1 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.029 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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