CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0508700

Gene name
Homology with Arabidopsis Similar to At2g37580: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1)

Module size 25 genes

NF 0.24

%ile 23.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.83 Os10g0508700 AK060639.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.37 45.0 0.89 Os01g0676200 AK070436.1 - Conserved hypothetical protein 2e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein O.I. H.G. S.X.
0.37 45.0 0.85 Os10g0536500 AK066849.1 - Conserved hypothetical protein 4e-1 At5g50660 unknown protein O.I. H.G. S.X.
0.35 41.7 0.78 Os02g0578400 9630.m03520 - Photosystem II oxygen evolving complex proteinPsbQ family protein 4e-7 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein O.I. H.G. S.X.
0.32 36.3 0.86 Os07g0105600 AK068377.1 - Photosystem II oxygen evolving complex proteinPsbQ family protein 1e-1 At5g56840 DNA-binding family protein O.I. H.G. S.X.
0.30 32.7 0.85 Os10g0533100 AK111957.1 - Conserved hypothetical protein 5e-1 At2g40020 - O.I. H.G. S.X.
0.28 31.1 0.93 Os03g0322600 AK067222.1 - Hypothetical protein 4e-2 At5g22340 unknown protein O.I. H.G. S.X.
0.27 27.5 0.90 Os05g0429500 AK058688.1 - Dienelactone hydrolase domain containing protein 2e+0 At1g35420 dienelactone hydrolase family protein O.I. H.G. S.X.
0.26 25.6 0.90 Os04g0610500 AK066289.1 - Peptidase M24, methionine aminopeptidase familyprotein 8e-7 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.26 25.6 0.92 Os05g0565400 CF334118 - - 3e+0 At3g11800 unknown protein O.I. H.G. S.X.
0.21 17.9 0.91 Os01g0929100 AK067717.1 - - 2e-3 At5g43750 unknown protein O.I. H.G. S.X.
0.20 16.5 0.90 Os01g0966200 AK058564.1 - Protein of unknown function YGGT family protein 4e-1 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) O.I. H.G. S.X.
0.20 16.5 0.90 Os04g0635700 AK062025.1 - Conserved hypothetical protein 3e-2 At4g17800 DNA-binding protein-related O.I. H.G. S.X.
0.19 15.1 0.93 Os03g0695500 CB636267 - Protein of unknown function DUF1517 family protein 1e+0 At1g54520 unknown protein O.I. H.G. S.X.
0.17 12.6 0.90 Os12g0257000 AK062220.1 - Serine carboxypeptidase I precursor (EC 3.4.16.5)(Carboxypeptidase C) 2e-8 At3g25420 scpl21 (serine carboxypeptidase-like 21) O.I. H.G. S.X.
0.16 11.3 0.94 Os12g0175500 AK060940.1 - Glutaredoxin-like protein 1e-2 At2g38270 CXIP2 (CAX-INTERACTING PROTEIN 2) O.I. H.G. S.X.
0.15 10.3 0.92 Os01g0617900 AK109342.2 - Conserved hypothetical protein 3e-9 At5g11450 oxygen-evolving complex-related O.I. H.G. S.X.
0.15 10.3 0.91 Os09g0439500 AK067780.1 - Chlorophyll A-B binding protein family protein 1e-7 At1g19150 LHCA6 O.I. H.G. S.X.
0.14 9.3 0.93 Os03g0827700 AK062046.1 - The start codon is not identified. 1e-25 At5g26742 emb1138 (embryo defective 1138) O.I. H.G. S.X.
0.14 9.3 0.89 Os07g0468100 BI811756 - Glutathione S-transferase GST 19 (EC 2.5.1.18) 5e-1 At1g17170 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) O.I. H.G. S.X.
0.14 9.3 0.91 Os11g0150100 AK068167.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 6e-2 At5g22620 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.14 9.3 0.90 Os02g0762100 AK068833.1 - Regulator of ribonuclease-like protein 2 6e-2 At3g02770 dimethylmenaquinone methyltransferase family protein O.I. H.G. S.X.
0.13 8.2 0.95 Os06g0308000 AK099680.1 - Trigger factor-like protein 6e-5 At5g55220 trigger factor type chaperone family protein O.I. H.G. S.X.
0.13 8.2 0.90 Os01g0805300 AK061140.1 - Conserved hypothetical protein 2e+0 At3g09280 unknown protein O.I. H.G. S.X.
0.10 5.7 0.92 Os10g0445600 AK120673.1 - Conserved hypothetical protein 3e+0 At4g31740 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.83	Os10g0508700	AK060639.1	-	Plant invertase/pectin methylesterase inhibitordomain containing protein	2e-1	At2g37580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.37	45.0	0.89	Os01g0676200	AK070436.1	-	Conserved hypothetical protein	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.
0.37	45.0	0.85	Os10g0536500	AK066849.1	-	Conserved hypothetical protein	4e-1	At5g50660	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.78	Os02g0578400	9630.m03520	-	Photosystem II oxygen evolving complex proteinPsbQ family protein	4e-7	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.
0.32	36.3	0.86	Os07g0105600	AK068377.1	-	Photosystem II oxygen evolving complex proteinPsbQ family protein	1e-1	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.
0.30	32.7	0.85	Os10g0533100	AK111957.1	-	Conserved hypothetical protein	5e-1	At2g40020	-	O.I.	H.G.	S.X.
0.28	31.1	0.93	Os03g0322600	AK067222.1	-	Hypothetical protein	4e-2	At5g22340	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.90	Os05g0429500	AK058688.1	-	Dienelactone hydrolase domain containing protein	2e+0	At1g35420	dienelactone hydrolase family protein	O.I.	H.G.	S.X.
0.26	25.6	0.90	Os04g0610500	AK066289.1	-	Peptidase M24, methionine aminopeptidase familyprotein	8e-7	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	O.I.	H.G.	S.X.
0.26	25.6	0.92	Os05g0565400	CF334118	-	-	3e+0	At3g11800	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.91	Os01g0929100	AK067717.1	-	-	2e-3	At5g43750	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	0.90	Os01g0966200	AK058564.1	-	Protein of unknown function YGGT family protein	4e-1	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	O.I.	H.G.	S.X.
0.20	16.5	0.90	Os04g0635700	AK062025.1	-	Conserved hypothetical protein	3e-2	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.
0.19	15.1	0.93	Os03g0695500	CB636267	-	Protein of unknown function DUF1517 family protein	1e+0	At1g54520	unknown protein	O.I.	H.G.	S.X.
0.17	12.6	0.90	Os12g0257000	AK062220.1	-	Serine carboxypeptidase I precursor (EC 3.4.16.5)(Carboxypeptidase C)	2e-8	At3g25420	scpl21 (serine carboxypeptidase-like 21)	O.I.	H.G.	S.X.
0.16	11.3	0.94	Os12g0175500	AK060940.1	-	Glutaredoxin-like protein	1e-2	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	O.I.	H.G.	S.X.
0.15	10.3	0.92	Os01g0617900	AK109342.2	-	Conserved hypothetical protein	3e-9	At5g11450	oxygen-evolving complex-related	O.I.	H.G.	S.X.
0.15	10.3	0.91	Os09g0439500	AK067780.1	-	Chlorophyll A-B binding protein family protein	1e-7	At1g19150	LHCA6	O.I.	H.G.	S.X.
0.14	9.3	0.93	Os03g0827700	AK062046.1	-	The start codon is not identified.	1e-25	At5g26742	emb1138 (embryo defective 1138)	O.I.	H.G.	S.X.
0.14	9.3	0.89	Os07g0468100	BI811756	-	Glutathione S-transferase GST 19 (EC 2.5.1.18)	5e-1	At1g17170	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	O.I.	H.G.	S.X.
0.14	9.3	0.91	Os11g0150100	AK068167.1	-	Phosphoglycerate/bisphosphoglycerate mutase familyprotein	6e-2	At5g22620	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.14	9.3	0.90	Os02g0762100	AK068833.1	-	Regulator of ribonuclease-like protein 2	6e-2	At3g02770	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.
0.13	8.2	0.95	Os06g0308000	AK099680.1	-	Trigger factor-like protein	6e-5	At5g55220	trigger factor type chaperone family protein	O.I.	H.G.	S.X.
0.13	8.2	0.90	Os01g0805300	AK061140.1	-	Conserved hypothetical protein	2e+0	At3g09280	unknown protein	O.I.	H.G.	S.X.
0.10	5.7	0.92	Os10g0445600	AK120673.1	-	Conserved hypothetical protein	3e+0	At4g31740	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.5 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.7	98.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.6	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.5	97.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.054 1 GO:0009765 Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
0.023 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.
0.020 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

SF	Genes	GO ID	Process Name
0.054	1	GO:0009765	Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
0.023	1	GO:0015031	The directed movement of proteins into, out of, within or between cells.
0.020	1	GO:0006457	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os10g0508700
Gene name
Homology with Arabidopsis	Similar to At2g37580: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1)
Module size	25 genes
NF	0.24
%ile	23.1

Co-expression analysis

Gene ID Os10g0508700 Gene name Homology with ArabidopsisSimilar to At2g37580: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1) Module size 25 genes NF 0.24 %ile 23.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os10g0508700

Gene name
Homology with Arabidopsis Similar to At2g37580: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1)

Module size 25 genes

NF 0.24

%ile 23.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays