CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0505500

Gene name
Homology with Arabidopsis Similar to At4g18425: unknown protein (HF=8e+0)

Module size 6 genes

NF 0.38

%ile 43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.67 Os10g0505500 AK062529.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 8e+0 At4g18425 unknown protein O.I. H.G. S.X.
0.67 87.2 0.68 Os05g0191700 9633.m00896 - Acid phosphatase (Class B) family protein 1e-1 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.44 58.1 0.70 Os06g0119600 AK066409.1 - Peptidase aspartic family protein 1e+0 At5g10760 aspartyl protease family protein O.I. H.G. S.X.
0.33 38.8 0.76 Os11g0653300 AK119392.1 - Hypothetical protein 3e-2 At3g21710 unknown protein O.I. H.G. S.X.
0.29 31.1 0.74 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - O.I. H.G. S.X.
0.15 10.3 0.70 Os11g0661600 AK108713.1 - Peroxidase precursor (EC 1.11.1.7) 3e-3 At5g15180 peroxidase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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