| Gene ID | Os10g0502600 |
| Gene name | |
| Homology with Arabidopsis | Similar to At3g48890: ATMP2 (HF=4e-26) |
| Module size | 25 genes |
| NF | 0.30 |
| %ile | 32.0 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.87 | 96.6 | 0.94 | Os10g0502600 | AK069511.1 | - | Cytochrome b5 domain containing protein | 4e-26 | At3g48890 | ATMP2 | O.I. | H.G. | S.X. | |
| 0.52 | 69.6 | 0.96 | Os06g0264300 | AK061556.1 | - | UV excision repair protein Rad23 family protein | 1e-12 | At3g02540 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) | O.I. | H.G. | S.X. | |
| 0.48 | 63.7 | 0.96 | Os11g0610700 | AK099760.1 | - | Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein | 2e-1 | At2g23320 | WRKY15 | O.I. | H.G. | S.X. | |
| 0.46 | 60.9 | 0.96 | Os02g0741900 | AK068461.1 | - | Conserved hypothetical protein | 2e+0 | At1g24050 | unknown protein | O.I. | H.G. | S.X. | |
| 0.45 | 58.8 | 0.96 | Os09g0411700 | AK058290.1 | - | PpiC-type peptidyl-prolyl cis-trans isomerasedomain containing protein | 2e-37 | At1g26550 | peptidyl-prolyl cis-trans isomerase PPIC-type family protein | O.I. | H.G. | S.X. | |
| 0.42 | 53.9 | 0.97 | Os02g0634900 | AK059769.1 | - | Proteasome subunit alpha type 2 (EC 3.4.25.1) (20Sproteasome alpha subunit B) (20S proteasome subunitalpha-2) | 2e-59 | At1g16470 | PAB1 (PROTEASOME SUBUNIT PAB1) | O.I. | H.G. | S.X. | |
| 0.39 | 48.3 | 0.95 | Os12g0507200 | AK099039.1 | - | Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) | 9e-49 | At1g13950 | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) | O.I. | H.G. | S.X. | |
| 0.36 | 44.0 | 0.96 | Os08g0548200 | AK102617.1 | - | ER lumen protein retaining receptor-like protein | 2e-22 | At1g19970 | ER lumen protein retaining receptor family protein | O.I. | H.G. | S.X. | |
| 0.34 | 40.0 | 0.96 | Os02g0666800 | AK101444.1 | - | Protein of unknown function DUF788 family protein | 3e-5 | At4g30500 | unknown protein | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | 0.96 | Os04g0386600 | AK104891.1 | - | Isocitrate lyase and phosphorylmutase familyprotein | 2e-8 | At2g43180 | catalytic | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.97 | Os06g0106100 | AK112060.1 | - | Cwf15/Cwc15 cell cycle control protein familyprotein | 6e-10 | At3g13200 | EMB2769 (EMBRYO DEFECTIVE 2769) | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.96 | Os11g0433200 | AK067867.1 | - | Peptidase A22B, minor histocompatibility antigenH13 family protein | 5e-3 | At1g01650 | aspartic-type endopeptidase/ peptidase | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | 0.96 | Os08g0532900 | AK105383.1 | - | contains InterPro domain(s): IPR000348, IPR009038 | 2e+0 | At1g14020 | unknown protein | O.I. | H.G. | S.X. | |
| 0.28 | 31.1 | 0.96 | Os02g0826400 | C98392 | - | Conserved hypothetical protein | 7e-2 | At4g24026 | unknown protein | O.I. | H.G. | S.X. | |
| 0.28 | 31.1 | 0.97 | Os01g0857700 | AK066959.1 | - | Cell cycle control protein cwf14 | 2e-19 | At4g21110 | G10 family protein | O.I. | H.G. | S.X. | |
| 0.27 | 27.5 | 0.95 | Os06g0728000 | AF541859.1 | - | HMGd1 protein (Nucleasome/chromatin assemblyfactor D protein NFD101) | 8e-3 | At1g20696 | HMGB3 (HIGH MOBILITY GROUP B 3) | O.I. | H.G. | S.X. | |
| 0.26 | 25.6 | 0.96 | Os09g0509200 | AK061863.1 | - | Pyruvate dehydrogenase E1 beta subunit isoform 3(EC 1.2.4.1) | 5e-42 | At5g50850 | MAB1 (MACCI-BOU) | O.I. | H.G. | S.X. | |
| 0.26 | 25.6 | 0.96 | Os01g0948300 | AK102153.1 | - | Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein | 9e+0 | At3g30370 | - | O.I. | H.G. | S.X. | |
| 0.25 | 24.1 | 0.97 | Os02g0803700 | AK103936.1 | - | 26S protease regulatory subunit 6A homolog(TAT-binding protein homolog 1) (TBP-1) | 7e-72 | At3g05530 | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) | O.I. | H.G. | S.X. | |
| 0.25 | 24.1 | 0.96 | Os03g0820600 | AK058941.1 | - | Actin-depolymerizing factor 3 (ADF 3) (ZmABP3)(ZmADF3) | 3e-2 | At3g46000 | ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) | O.I. | H.G. | S.X. | |
| 0.24 | 22.4 | 0.96 | Os07g0631100 | AK120972.1 | - | Putative zinc-binding region DUF701 domaincontaining protein | 2e-6 | At5g46030 | unknown protein | O.I. | H.G. | S.X. | |
| 0.19 | 15.1 | 0.96 | Os02g0199900 | AB033536.1 | - | 26S proteasome regulatory complex subunit p42D | 2e-91 | At5g43010 | RPT4A | O.I. | H.G. | S.X. | |
| 0.17 | 12.6 | 0.96 | Os03g0758800 | AK060387.1 | - | Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D) | 7e-31 | At1g69410 | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) | O.I. | H.G. | S.X. | |
| 0.16 | 11.3 | 0.97 | Os02g0792900 | AK068367.1 | - | TMS membrane protein/tumour differentiallyexpressed protein family protein | 1e-15 | At1g16180 | TMS membrane family protein / tumour differentially expressed (TDE) family protein | O.I. | H.G. | S.X. | |
| 0.14 | 9.3 | 0.96 | Os08g0537800 | AK059388.1 | - | The start codon is not identified. | 4e-2 | At2g37600 | 60S ribosomal protein L36 (RPL36A) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 17.0 | 98.8 | GSM422672 | Drought | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 10.1 | 98.0 | GSM422674 | Musa_DNA_RICE | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 9.7 | 98.0 | GSM377084 | Genomic DNA - 45 day old leaf sample - mutant f1856 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.6 | 97.9 | GSM377071 | Genomic DNA - 45 day old leaf sample - mutant d256 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.4 | 97.9 | GSM377070 | Genomic DNA - 45 day old leaf sample - mutant d1 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.4 | 97.9 | GSM422676 | Control | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 8.4 | 97.7 | GSM377080 | Genomic DNA - 45 day old leaf sample - mutant g6728 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 8.1 | 97.7 | GSM377078 | Genomic DNA - 45 day old leaf sample - mutant g6603 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 8.0 | 97.6 | GSM377085 | Genomic DNA - 45 day old leaf sample - mutant f2045 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 8.0 | 97.6 | GSM377082 | Genomic DNA - 45 day old leaf sample - mutant g9799 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| SF | Genes | GO ID | Process Name | Link to AmiGO |
|---|---|---|---|---|
| 0.056 | 1 | GO:0006289 | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). |  |
| 0.038 | 1 | GO:0006413 | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA. | |
| 0.028 | 1 | GO:0006511 | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein. | |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
Back to the CoP portal site
Back to the KAGIANA project homepage