Co-expression analysis

Gene ID Os10g0502000
Gene name
Homology with ArabidopsisSimilar to At5g53490: thylakoid lumenal 17.4 kDa protein, chloroplast (HF=3e-18)
Module size 16 genes
NF 0.69
%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.94Os10g0502000AK099827.1-Thylakoid lumenal 17.4 kDa protein, chloroplastprecursor (P17.4)3e-18At5g53490thylakoid lumenal 17.4 kDa protein, chloroplastO.I.H.G.S.X.
0.7793.10.96Os03g0815400AK067057.1-Ribosomal protein L17 family protein1e-4At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.
0.7793.10.98Os01g0678600AK120629.1-Ribosomal protein S20 family protein1e-1At4g30460glycine-rich proteinO.I.H.G.S.X.
0.7692.20.95Os02g0328300AK068505.1-Fruit protein PKIWI5023e+0At1g12665-O.I.H.G.S.X.
0.7491.40.96Os04g0461100AK068022.1-Plastid and cyanobacterial ribosomal proteinPSRP-3/Ycf65 family protein8e-12At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.7391.10.97Os01g0278900AK120429.1-Hypothetical protein3e-7At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.7189.60.98Os02g0822600AK060728.1-50S ribosomal protein L9, chloroplast precursor(CL13)2e+0At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.7189.60.96Os03g0843400AK061198.1-30S ribosomal protein S6, chloroplast precursor(Fragment)3e-2At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.
0.7189.60.95Os03g0125000AK070779.1--2e-3At4g01310ribosomal protein L5 family proteinO.I.H.G.S.X.
0.6987.90.97Os03g0315800AK061971.1-30S ribosomal protein S1, chloroplast precursor(CS1)9e-53At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.
0.6987.90.97Os01g0749200AK104146.1-50S ribosomal protein L131e-20At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.6787.20.96Os02g0259600AK062182.1-50S ribosomal protein L21, chloroplast precursor(CL21) (CS-L7)2e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.
0.5978.00.97Os03g0219900AK066527.1-50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment)5e-1At3g25920RPL15O.I.H.G.S.X.
0.5777.00.97Os06g0332800AK060439.1-Bundle sheath defective protein 21e-1At3g47650bundle-sheath defective protein 2 family / bsd2 familyO.I.H.G.S.X.
0.5371.30.94Os07g0570700AK065242.1-Ribosome recycling factor, chloroplast precursor(Ribosome releasing factor, chloroplast) (RRF) (CpFrr)(RRFHCP)7e-13At3g63190RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)O.I.H.G.S.X.
0.5168.70.97Os03g0284400AF095709.1-Ribosomal protein L10-like2e+0At5g43150unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.698.4GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.798.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.298.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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