CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0501500

Gene name
Homology with Arabidopsis Similar to At2g23790: unknown protein (HF=1e-8)

Module size 6 genes

NF 0.04

%ile 2.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.88 Os10g0501500 AK058495.1 - Protein of unknown function DUF607 family protein 1e-8 At2g23790 unknown protein O.I. H.G. S.X.
0.07 3.7 0.92 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) O.I. H.G. S.X.
0.04 2.0 0.86 Os02g0655600 AK101560.1 - Protein of unknown function DUF676 domaincontaining protein 6e-5 At5g51180 unknown protein O.I. H.G. S.X.
0.03 1.4 0.90 Os08g0104700 AK120989.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 7e-4 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding O.I. H.G. S.X.
0.02 1.0 0.88 Os02g0166600 AK069371.1 - Conserved hypothetical protein 5e-2 At5g39540 - O.I. H.G. S.X.
0.01 0.5 0.91 Os04g0648800 AK067751.1 - Conserved hypothetical protein 1e-6 At2g15530 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.88	Os10g0501500	AK058495.1	-	Protein of unknown function DUF607 family protein	1e-8	At2g23790	unknown protein	O.I.	H.G.	S.X.
0.07	3.7	0.92	Os03g0248000	AK070612.1	-	Autophagy protein Apg9 family protein	3e-5	At2g31260	APG9 (autophagy 9)	O.I.	H.G.	S.X.
0.04	2.0	0.86	Os02g0655600	AK101560.1	-	Protein of unknown function DUF676 domaincontaining protein	6e-5	At5g51180	unknown protein	O.I.	H.G.	S.X.
0.03	1.4	0.90	Os08g0104700	AK120989.1	-	Phosphatidylinositol-4-phosphate 5-kinase familyprotein	7e-4	At4g33240	1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.02	1.0	0.88	Os02g0166600	AK069371.1	-	Conserved hypothetical protein	5e-2	At5g39540	-	O.I.	H.G.	S.X.
0.01	0.5	0.91	Os04g0648800	AK067751.1	-	Conserved hypothetical protein	1e-6	At2g15530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.6 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
11.6	98.2	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
10.6	98.1	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377079	Genomic DNA - 45 day old leaf sample - mutant g6686	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.3	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.14703.2.A1_a_at, orthologous to the query gene, Os10g0501500

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.2 Zm.14703.2.A1_a_at At2g23790 hypothetical protein LOC100194060 - 3e-7 At5g66650 unknown protein O.I. H.G. S.X.
0.88 96.7 Zm.353.1.S1_at At2g23790 profilin - 2e-12 At4g29350 PFN2 (PROFILIN 2) O.I. H.G. S.X.
0.88 96.7 ZmAffx.289.1.A1_at At2g23790 - - 2e+1 At5g15430 calmodulin-binding protein-related O.I. H.G. S.X.
0.87 96.4 Zm.16527.1.A1_s_at At2g23790 hypothetical protein LOC100277800 - 5e-13 At1g03260 - O.I. H.G. S.X.
0.85 95.9 Zm.7012.12.S1_a_at At2g23790 Ribosomal protein S8 - 4e+0 At5g13220 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) O.I. H.G. S.X.
0.85 95.9 Zm.3929.1.S1_at At2g23790 hypothetical protein LOC100274493 - 7e-1 At1g78680 ATGGH2 (gamma-glutamyl hydrolase 2) O.I. H.G. S.X.
0.85 95.9 Zm.2978.1.S1_at At2g23790 peptidyl-tRNA hydrolase - 4e-10 At1g18440 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.
0.82 94.6 Zm.14702.1.A1_at At2g23790 Ribosomal protein S11 - 1e+0 At5g46730 glycine-rich protein O.I. H.G. S.X.
0.81 94.3 Zm.3939.1.A1_at At2g23790 hypothetical protein LOC100273567 - 1e+0 At3g44280 unknown protein O.I. H.G. S.X.
0.78 92.5 Zm.3937.2.A1_at At2g23790 - - 4e+0 At5g07020 proline-rich family protein O.I. H.G. S.X.
0.76 91.1 Zm.3940.1.S1_at At2g23790 single myb histone 5 - 3e-3 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.
0.75 90.8 Zm.7128.1.A1_a_at At2g23790 hypothetical protein LOC100276381 - 2e+0 At5g25290 F-box family protein O.I. H.G. S.X.
0.73 89.9 Zm.6248.1.A1_at At2g23790 - - 3e+0 At5g07890 myosin heavy chain-related O.I. H.G. S.X.
0.73 89.9 Zm.16530.1.A1_at At2g23790 - - 3e-51 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) O.I. H.G. S.X.
0.72 88.6 Zm.3934.1.S1_at At2g23790 hypothetical protein LOC100277172 - 8e+0 At4g28460 unknown protein O.I. H.G. S.X.
0.72 88.6 Zm.7034.2.S1_at At2g23790 - - 1e+0 At4g18080 unknown protein O.I. H.G. S.X.
0.70 87.0 Zm.14490.1.S1_at At2g23790 - - 3e-4 At2g25070 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.69 86.5 Zm.2142.1.A1_at At2g23790 hypothetical protein LOC100191429 - 1e-8 At2g42880 ATMPK20 O.I. H.G. S.X.
0.67 85.8 Zm.14413.1.A1_at At2g23790 hypothetical protein LOC100279243 - 1e-21 At5g10270 CDKC O.I. H.G. S.X.
0.67 85.8 Zm.16527.1.A1_at At2g23790 hypothetical protein LOC100277800 - 5e-13 At1g03260 - O.I. H.G. S.X.
0.67 85.8 Zm.16805.3.S1_x_at At2g23790 basic endochitinase C - 2e-10 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.67 85.8 Zm.2200.1.A1_at At2g23790 - - 6e+0 At4g35785 nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.66 82.3 Zm.6246.1.S1_a_at At2g23790 hypothetical protein LOC100274295 /// hypothetical protein LOC100277252 - 1e-5 At2g22080 unknown protein O.I. H.G. S.X.
0.65 82.1 Zm.7048.1.A1_at At2g23790 hypothetical protein LOC100194145 - 6e-7 At4g30996 unknown protein O.I. H.G. S.X.
0.65 82.1 Zm.14501.4.S1_a_at At2g23790 hypothetical protein LOC100191411 /// hypothetical protein LOC100280317 - 3e-46 At5g22060 ATJ2 O.I. H.G. S.X.
0.63 81.1 Zm.7126.2.S1_at At2g23790 - - 2e-9 At3g51460 RHD4 (ROOT HAIR DEFECTIVE4) O.I. H.G. S.X.
0.62 79.8 Zm.4061.1.S1_at At2g23790 - - 3e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.61 79.5 Zm.3937.1.S1_a_at At2g23790 hypothetical protein LOC100276728 - 6e-4 At4g25680 unknown protein O.I. H.G. S.X.
0.59 76.1 Zm.14705.1.S1_at At2g23790 leucoanthocyanidin dioxygenase - 2e+0 At1g35320 unknown protein O.I. H.G. S.X.
0.56 74.4 Zm.714.1.A1_at At2g23790 phospholipid transfer protein - 6e+0 At3g48490 unknown protein O.I. H.G. S.X.
0.55 71.6 Zm.14474.1.A1_at At2g23790 - - 1e-33 At2g34560 katanin, putative O.I. H.G. S.X.
0.53 69.1 Zm.1323.1.S1_at At2g23790 hypothetical protein LOC100275312 - 6e+0 At3g30840 unknown protein O.I. H.G. S.X.
0.53 69.1 Zm.221.1.A1_at At2g23790 calcium-dependent protein kinase - 4e-25 At3g20410 CPK9 (calmodulin-domain protein kinase 9) O.I. H.G. S.X.
0.51 66.4 Zm.7034.2.A1_a_at At2g23790 hypothetical protein LOC100279884 - 1e+0 At4g18080 unknown protein O.I. H.G. S.X.
0.51 66.4 Zm.16532.4.S1_x_at At2g23790 60S ribosomal protein L18a - 7e-68 At2g34480 60S ribosomal protein L18A (RPL18aB) O.I. H.G. S.X.
0.43 52.8 Zm.5823.1.A1_at At2g23790 hypothetical protein LOC100194104 - 2e-10 At1g14310 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	99.2	Zm.14703.2.A1_a_at	At2g23790	hypothetical protein LOC100194060	-	3e-7	At5g66650	unknown protein	O.I.	H.G.	S.X.
0.88	96.7	Zm.353.1.S1_at	At2g23790	profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.
0.88	96.7	ZmAffx.289.1.A1_at	At2g23790	-	-	2e+1	At5g15430	calmodulin-binding protein-related	O.I.	H.G.	S.X.
0.87	96.4	Zm.16527.1.A1_s_at	At2g23790	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	O.I.	H.G.	S.X.
0.85	95.9	Zm.7012.12.S1_a_at	At2g23790	Ribosomal protein S8	-	4e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.
0.85	95.9	Zm.3929.1.S1_at	At2g23790	hypothetical protein LOC100274493	-	7e-1	At1g78680	ATGGH2 (gamma-glutamyl hydrolase 2)	O.I.	H.G.	S.X.
0.85	95.9	Zm.2978.1.S1_at	At2g23790	peptidyl-tRNA hydrolase	-	4e-10	At1g18440	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.
0.82	94.6	Zm.14702.1.A1_at	At2g23790	Ribosomal protein S11	-	1e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.
0.81	94.3	Zm.3939.1.A1_at	At2g23790	hypothetical protein LOC100273567	-	1e+0	At3g44280	unknown protein	O.I.	H.G.	S.X.
0.78	92.5	Zm.3937.2.A1_at	At2g23790	-	-	4e+0	At5g07020	proline-rich family protein	O.I.	H.G.	S.X.
0.76	91.1	Zm.3940.1.S1_at	At2g23790	single myb histone 5	-	3e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.75	90.8	Zm.7128.1.A1_a_at	At2g23790	hypothetical protein LOC100276381	-	2e+0	At5g25290	F-box family protein	O.I.	H.G.	S.X.
0.73	89.9	Zm.6248.1.A1_at	At2g23790	-	-	3e+0	At5g07890	myosin heavy chain-related	O.I.	H.G.	S.X.
0.73	89.9	Zm.16530.1.A1_at	At2g23790	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.
0.72	88.6	Zm.3934.1.S1_at	At2g23790	hypothetical protein LOC100277172	-	8e+0	At4g28460	unknown protein	O.I.	H.G.	S.X.
0.72	88.6	Zm.7034.2.S1_at	At2g23790	-	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.
0.70	87.0	Zm.14490.1.S1_at	At2g23790	-	-	3e-4	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.69	86.5	Zm.2142.1.A1_at	At2g23790	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	O.I.	H.G.	S.X.
0.67	85.8	Zm.14413.1.A1_at	At2g23790	hypothetical protein LOC100279243	-	1e-21	At5g10270	CDKC	O.I.	H.G.	S.X.
0.67	85.8	Zm.16527.1.A1_at	At2g23790	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	O.I.	H.G.	S.X.
0.67	85.8	Zm.16805.3.S1_x_at	At2g23790	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.
0.67	85.8	Zm.2200.1.A1_at	At2g23790	-	-	6e+0	At4g35785	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.66	82.3	Zm.6246.1.S1_a_at	At2g23790	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	O.I.	H.G.	S.X.
0.65	82.1	Zm.7048.1.A1_at	At2g23790	hypothetical protein LOC100194145	-	6e-7	At4g30996	unknown protein	O.I.	H.G.	S.X.
0.65	82.1	Zm.14501.4.S1_a_at	At2g23790	hypothetical protein LOC100191411 /// hypothetical protein LOC100280317	-	3e-46	At5g22060	ATJ2	O.I.	H.G.	S.X.
0.63	81.1	Zm.7126.2.S1_at	At2g23790	-	-	2e-9	At3g51460	RHD4 (ROOT HAIR DEFECTIVE4)	O.I.	H.G.	S.X.
0.62	79.8	Zm.4061.1.S1_at	At2g23790	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.61	79.5	Zm.3937.1.S1_a_at	At2g23790	hypothetical protein LOC100276728	-	6e-4	At4g25680	unknown protein	O.I.	H.G.	S.X.
0.59	76.1	Zm.14705.1.S1_at	At2g23790	leucoanthocyanidin dioxygenase	-	2e+0	At1g35320	unknown protein	O.I.	H.G.	S.X.
0.56	74.4	Zm.714.1.A1_at	At2g23790	phospholipid transfer protein	-	6e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.
0.55	71.6	Zm.14474.1.A1_at	At2g23790	-	-	1e-33	At2g34560	katanin, putative	O.I.	H.G.	S.X.
0.53	69.1	Zm.1323.1.S1_at	At2g23790	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	O.I.	H.G.	S.X.
0.53	69.1	Zm.221.1.A1_at	At2g23790	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	O.I.	H.G.	S.X.
0.51	66.4	Zm.7034.2.A1_a_at	At2g23790	hypothetical protein LOC100279884	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.
0.51	66.4	Zm.16532.4.S1_x_at	At2g23790	60S ribosomal protein L18a	-	7e-68	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.
0.43	52.8	Zm.5823.1.A1_at	At2g23790	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Os10g0501500
Gene name
Homology with Arabidopsis	Similar to At2g23790: unknown protein (HF=1e-8)
Module size	6 genes
NF	0.04
%ile	2.5

Co-expression analysis

Gene ID Os10g0501500 Gene name Homology with ArabidopsisSimilar to At2g23790: unknown protein (HF=1e-8) Module size 6 genes NF 0.04 %ile 2.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os10g0501500

Gene name
Homology with Arabidopsis Similar to At2g23790: unknown protein (HF=1e-8)

Module size 6 genes

NF 0.04

%ile 2.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera