CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0501500

Gene name
Homology with Arabidopsis Similar to At2g23790: unknown protein (HF=1e-8)

Module size 6 genes

NF 0.04

%ile 2.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.88 Os10g0501500 AK058495.1 - Protein of unknown function DUF607 family protein 1e-8 At2g23790 unknown protein O.I. H.G. S.X.
0.07 3.7 0.92 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) O.I. H.G. S.X.
0.04 2.0 0.86 Os02g0655600 AK101560.1 - Protein of unknown function DUF676 domaincontaining protein 6e-5 At5g51180 unknown protein O.I. H.G. S.X.
0.03 1.4 0.90 Os08g0104700 AK120989.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 7e-4 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding O.I. H.G. S.X.
0.02 1.0 0.88 Os02g0166600 AK069371.1 - Conserved hypothetical protein 5e-2 At5g39540 - O.I. H.G. S.X.
0.01 0.5 0.91 Os04g0648800 AK067751.1 - Conserved hypothetical protein 1e-6 At2g15530 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.6 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1617242_at, orthologous to the query gene, Os10g0501500

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1617242_at At2g23790 hypothetical protein LOC100255381 - 2e-4 At1g09575 unknown protein O.I. H.G. S.X.
0.67 87.9 1612739_at At2g23790 boron transporter - 1e+0 At5g38490 DNA binding O.I. H.G. S.X.
0.50 72.7 1607233_at At2g23790 hypothetical protein LOC100245593 - 5e-3 At5g64850 unknown protein O.I. H.G. S.X.
0.25 30.5 1613097_at At2g23790 hypothetical protein LOC100241460 - 2e-18 At3g61260 DNA-binding family protein / remorin family protein O.I. H.G. S.X.
0.17 18.2 1618308_at At2g23790 hypothetical protein LOC100247408 - 4e-16 At5g63770 ATDGK2 (Diacylglycerol kinase 2) O.I. H.G. S.X.
0.02 3.2 1613576_s_at At2g23790 calmodulin /// hypothetical protein LOC100267126 - 1e-13 At2g27030 CAM5 (CALMODULIN 5) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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