CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0501500

Gene name
Homology with Arabidopsis Similar to At2g23790: unknown protein (HF=1e-8)

Module size 6 genes

NF 0.04

%ile 2.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.88 Os10g0501500 AK058495.1 - Protein of unknown function DUF607 family protein 1e-8 At2g23790 unknown protein O.I. H.G. S.X.
0.07 3.7 0.92 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) O.I. H.G. S.X.
0.04 2.0 0.86 Os02g0655600 AK101560.1 - Protein of unknown function DUF676 domaincontaining protein 6e-5 At5g51180 unknown protein O.I. H.G. S.X.
0.03 1.4 0.90 Os08g0104700 AK120989.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 7e-4 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding O.I. H.G. S.X.
0.02 1.0 0.88 Os02g0166600 AK069371.1 - Conserved hypothetical protein 5e-2 At5g39540 - O.I. H.G. S.X.
0.01 0.5 0.91 Os04g0648800 AK067751.1 - Conserved hypothetical protein 1e-6 At2g15530 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.6 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig5106_at, orthologous to the query gene, Os10g0501500

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.54 70.3 Contig5106_at At2g23790 - - 3e-8 At5g66650 unknown protein O.I. H.G. S.X.
0.77 90.8 rbasd23b03_s_at At2g23790 - - 8e-1 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) O.I. H.G. S.X.
0.72 87.4 Contig24006_at At2g23790 - - 4e+0 At4g13150 unknown protein O.I. H.G. S.X.
0.60 77.3 Contig5805_at At2g23790 - - 3e-2 At4g20280 TAF11 (TBP-ASSOCIATED FACTOR 11) O.I. H.G. S.X.
0.58 74.9 Contig1269_at At2g23790 - - 2e-84 At3g17390 MTO3 (METHIONINE OVER-ACCUMULATOR 3) O.I. H.G. S.X.
0.53 69.7 Contig4140_s_at At2g23790 - - 2e-7 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) O.I. H.G. S.X.
0.53 69.7 Contig10312_at At2g23790 - - 4e-1 At4g36130 60S ribosomal protein L8 (RPL8C) O.I. H.G. S.X.
0.53 69.7 Contig11093_at At2g23790 - - 3e-21 At4g20440 smB (small nuclear ribonucleoprotein associated protein B) O.I. H.G. S.X.
0.53 69.7 Contig25358_at At2g23790 - - 2e+0 At1g60850 ATRPAC42 O.I. H.G. S.X.
0.52 68.3 Contig12597_at At2g23790 - - 2e-1 At1g50680 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.49 63.7 Contig33_at At2g23790 - - 6e+0 At4g04780 MED21 (MEDIATOR 21) O.I. H.G. S.X.
0.38 49.5 rbasd3a10_s_at At2g23790 - - 1e-6 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) O.I. H.G. S.X.
0.37 47.9 Contig7526_at At2g23790 - - 8e-12 At4g00850 GIF3 (GRF1-INTERACTING FACTOR 3) O.I. H.G. S.X.
0.36 47.1 Contig651_at At2g23790 - - 2e-20 At4g31990 ASP5 (ASPARTATE AMINOTRANSFERASE 5) O.I. H.G. S.X.
0.34 43.6 Contig5804_at At2g23790 - - 2e-22 At5g23120 HCF136 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage