Co-expression analysis

Gene ID	Os10g0501500
Gene name
Homology with Arabidopsis	Similar to At2g23790: unknown protein (HF=1e-8)
Module size	6 genes
NF	0.04
%ile	2.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	0.88	Os10g0501500	AK058495.1	-	Protein of unknown function DUF607 family protein	1e-8	At2g23790	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	0.92	Os03g0248000	AK070612.1	-	Autophagy protein Apg9 family protein	3e-5	At2g31260	APG9 (autophagy 9)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	0.86	Os02g0655600	AK101560.1	-	Protein of unknown function DUF676 domaincontaining protein	6e-5	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	0.90	Os08g0104700	AK120989.1	-	Phosphatidylinositol-4-phosphate 5-kinase familyprotein	7e-4	At4g33240	1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	0.88	Os02g0166600	AK069371.1	-	Conserved hypothetical protein	5e-2	At5g39540	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	0.91	Os04g0648800	AK067751.1	-	Conserved hypothetical protein	1e-6	At2g15530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.2	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
10.6	98.1	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377079	Genomic DNA - 45 day old leaf sample - mutant g6686	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.3	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.3857.1.S1_a_at, orthologous to the query gene, Os10g0501500

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	46.1	Gma.3857.1.S1_a_at	At2g23790	-	-	3e-11	At2g23790	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.85356.1.S1_at	At2g23790	-	-	6e-5	At3g61060	AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.85974.1.S1_at	At2g23790	-	-	7e-2	At2g22170	lipid-associated family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.6433.1.S1_at	At2g23790	acyl-CoA oxidase	-	2e-43	At3g51840	ACX4 (ACYL-COA OXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.6752.1.S1_at	At2g23790	3-methylcrotonyl-CoA carboxylase, biotin-carrier domain	-	2e-51	At1g03090	MCCA	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.10907.1.S1_s_at	At2g23790	-	-	1e-5	At4g27450	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.7692.1.S1_at	At2g23790	-	-	3e-27	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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