CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0499800

Gene name
Homology with Arabidopsis Similar to At4g35710: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.08

%ile 5.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os10g0499800 AK099535.1 - Fertility restorer 1e-1 At4g35710 unknown protein O.I. H.G. S.X.
0.24 22.4 0.97 Os11g0208100 AK101043.1 - Cyclin-like F-box domain containing protein 1e+0 At2g20362 unknown protein O.I. H.G. S.X.
0.07 3.7 0.97 Os10g0381200 9638.m01990 - - 2e+0 At5g20110 dynein light chain, putative O.I. H.G. S.X.
0.05 2.5 0.97 Os11g0617800 AK062778.1 - Hypothetical protein 2e+0 At1g75190 unknown protein O.I. H.G. S.X.
0.04 2.0 0.97 Os12g0147000 9640.m00437 - Protein of unknown function DUF296 domaincontaining protein 5e-1 At4g00200 DNA binding O.I. H.G. S.X.
0.04 2.0 0.97 Os12g0102300 AY341860.1 - WRKY transcription factor 57 3e-3 At5g07100 WRKY26 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.1 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
43.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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