CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0498300

Gene name
Homology with Arabidopsis Similar to At5g59870: HTA6 (HF=2e+0)

Module size 6 genes

NF 0.18

%ile 15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.84 Os10g0498300 AK060338.1 - Epoxide hydrolase 2e+0 At5g59870 HTA6 O.I. H.G. S.X.
0.44 58.1 0.87 Os04g0514500 AK073502.1 - TPR-like domain containing protein 6e-4 At2g13600 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.40 51.1 0.94 Os02g0307800 AK065304.1 - Conserved hypothetical protein 4e-2 At5g02220 unknown protein O.I. H.G. S.X.
0.18 13.7 0.92 Os07g0134700 9635.m00352 - Mitochodrial transcription terminationfactor-related family protein 2e-5 At2g21710 EMB2219 (embryo defective 2219) O.I. H.G. S.X.
0.14 9.3 0.92 Os12g0616600 AK067918.1 - Protease sppA, chloroplast precursor (EC 3.4.21.-) 7e-4 At4g18370 DEG5 (DEGP PROTEASE 5) O.I. H.G. S.X.
0.05 2.5 0.88 Os03g0271100 AB095095.1 - Sigma factor SIG2B 4e-3 At1g08540 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.5 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.7 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006352 Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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