CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0493300

Gene name
Homology with Arabidopsis Similar to At5g60810: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.53

%ile 70.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.82 Os10g0493300 AK065202.1 - Conserved hypothetical protein 3e+0 At5g60810 unknown protein O.I. H.G. S.X.
0.60 79.7 0.86 Os03g0608700 AK066005.1 - The start codon is not identified. 3e+0 At4g24600 unknown protein O.I. H.G. S.X.
0.44 58.1 0.86 Os10g0540300 AK066440.1 - Conserved hypothetical protein 2e+0 At1g66260 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.38 46.9 0.82 Os05g0412400 AK063711.1 - Conserved hypothetical protein 2e+0 At4g31580 SRZ-22 O.I. H.G. S.X.
0.36 44.0 0.84 Os02g0467200 AK063704.1 - Hypothetical protein 5e+0 At5g37720 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.35 41.7 0.87 Os04g0297800 CF327907 - Conserved hypothetical protein 4e-1 At1g53460 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
143.5 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.6 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.143 1 GO:0006313 Any process involved in a type of transpositional recombination which occurs via a DNA intermediate.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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