CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0481100

Gene name
Homology with Arabidopsis Similar to At2g37180: RD28 (RESPONSIVE TO DESICCATION 28) (HF=2e-7)

Module size 6 genes

NF 0.27

%ile 26.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.93 Os10g0481100 AK106746.1 - Aquaporin PIP2.1 (Plasma membrane intrinsicprotein 2a) (PIP2a) 2e-7 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) O.I. H.G. S.X.
0.40 51.1 0.93 Os02g0689000 AK109306.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 8e+0 At5g22390 unknown protein O.I. H.G. S.X.
0.29 31.1 0.92 Os04g0457300 AK061416.1 - Protein of unknown function DUF6 domain containingprotein 2e-4 At1g66620 seven in absentia (SINA) protein, putative O.I. H.G. S.X.
0.21 17.9 0.92 Os03g0347700 AK110492.1 - NPH3 domain containing protein 1e-9 At2g47860 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.18 13.7 0.92 Os08g0486700 9636.m03821 - Conserved hypothetical protein 7e-3 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.17 12.6 0.92 Os11g0270500 AK110480.1 - Disease resistance protein family protein 2e-2 At3g59300 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.0 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.6 99.4 GSM100441 Rice Azucena 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
13.3 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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