CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0476300

Gene name
Homology with Arabidopsis Similar to At3g23340: ckl10 (Casein Kinase I-like 10) (HF=7e-51)

Module size 11 genes

NF 0.63

%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.95 Os10g0476300 AK120765.1 - Casein kinase I, delta isoform (EC 2.7.1.-)(CKI-delta) (CKId) (Fragment) 7e-51 At3g23340 ckl10 (Casein Kinase I-like 10) O.I. H.G. S.X.
0.74 91.4 0.98 Os01g0226600 AK121458.1 - C4-dicarboxylate transporter/malic acid transportprotein family protein 2e-5 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) O.I. H.G. S.X.
0.74 91.4 0.98 Os07g0561900 AK109697.1 - Conserved hypothetical protein 5e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.70 88.4 0.98 Os02g0102800 AK070607.1 - Pleckstrin-like domain containing protein 1e-34 At5g45560 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.97 Os03g0189300 AK069700.1 - Conserved hypothetical protein 8e-1 At5g48420 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os06g0607900 AK070879.1 - GRAM domain containing protein 3e+0 At5g66930 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os10g0549100 AK100377.1 - Major sperm protein domain containing protein 4e-2 At1g08820 VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) O.I. H.G. S.X.
0.59 78.0 0.97 Os04g0334700 AK120870.1 - Peptidase A1, pepsin family protein 3e-3 At3g02740 aspartyl protease family protein O.I. H.G. S.X.
0.56 76.3 0.97 Os01g0921500 AK105517.1 - CBS domain containing protein 5e-2 At1g22110 structural constituent of ribosome O.I. H.G. S.X.
0.52 69.6 0.96 Os01g0193400 AK069948.1 - - 3e-3 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.44 58.1 0.98 Os11g0136600 AF319480.1 - Calcium-dependent protein kinase (Fragment) 5e-9 At5g12180 CPK17 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.4 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.8 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.167 1 GO:0019722 A series of molecular signals in which a cell uses calcium ions to convert an extracellular signal into a response.
0.167 1 GO:0048015 A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response.
0.154 1 GO:0006928 Any process involved in the controlled movement of a cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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