Co-expression analysis

Gene ID Os10g0464400
Gene name
Homology with ArabidopsisSimilar to At4g21470: ATFMN/FHY (riboflavin kinase/FMN hydrolase) (HF=3e-22)
Module size 6 genes
NF 0.69
%ile 91.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.96Os10g0464400AY332469.1-Riboflavin kinase / FAD synthetase family protein3e-22At4g21470ATFMN/FHY (riboflavin kinase/FMN hydrolase)O.I.H.G.S.X.
0.8094.60.96Os02g0773300AK071811.1-Pyridoxal phosphate-dependent deaminase familyprotein3e-12At1g48420D-CDES (D-CYSTEINE DESULFHYDRASE)O.I.H.G.S.X.
0.6787.20.96Os12g0620400AK072503.1-Methyl-CpG binding domain containing protein8e-1At5g43175basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6382.70.95Os08g0562700AK066773.1-Aminopeptidase N4e-44At1g63770peptidase M1 family proteinO.I.H.G.S.X.
0.5068.00.96Os05g0101200AY262026.1-Peroxisomal membrane anchor protein (Pex14p)domain containing protein1e+0At5g61660glycine-rich proteinO.I.H.G.S.X.
0.4762.30.96Os01g0104100AK072797.1-The start codon is not identified.1e-2At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.098.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM275413Azucena root tip_Buckled at the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
5.196.6GSM275412Azucena root tip Buckled at the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
4.596.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.496.2GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.496.2GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.Link to AmiGO
0.2501GO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.Link to AmiGO
0.2501GO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage