CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os10g0459700

Gene name
Homology with Arabidopsis Similar to At4g13990: exostosin family protein (HF=7e-2)

Module size 6 genes

NF 0.63

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. H.G. S.X.
0.73 91.1 0.86 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.67 87.2 0.87 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.46 60.9 0.88 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. H.G. S.X.
0.39 48.3 0.86 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.2	0.83	Os06g0163900	AK102733.1	-	Disease resistance protein family protein	1e-1	At2g41990	unknown protein	O.I.	H.G.	S.X.
0.63	82.7	0.80	Os06g0652600	AK101495.1	-	Lustrin A	2e-1	At2g40970	myb family transcription factor	O.I.	H.G.	S.X.
0.48	63.7	0.86	Os08g0253800	AK108045.1	-	Glycosyl transferase, family 2 domain containingprotein	7e-14	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	O.I.	H.G.	S.X.
0.46	60.9	0.79	Os03g0121300	AK064633.1	-	Peroxidase 1	9e-3	At5g14130	peroxidase, putative	O.I.	H.G.	S.X.
0.46	60.9	0.82	Os04g0308400	CB965389	-	Conserved hypothetical protein	1e+1	At3g48020	-	O.I.	H.G.	S.X.
0.43	55.4	0.72	Os12g0204800	AK102485.1	-	Disease resistance protein family protein	3e-1	At1g10230	ASK18 (ARABIDOPSIS SKP1-LIKE 18)	O.I.	H.G.	S.X.
0.43	55.4	0.81	Os11g0689100	AK108692.1	-	Disease resistance protein family protein	2e+0	At4g22400	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.88	Os06g0660200	AK101191.1	-	Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6)	1e-15	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.
0.40	51.1	0.74	Os01g0598000	AK068878.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-4	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.40	51.1	0.77	Os09g0414900	AK059073.1	-	GASA5-like protein (Fragment)	6e-3	At3g10185	-	O.I.	H.G.	S.X.
0.38	46.9	0.86	Os04g0308300	9632.m02269	-	Conserved hypothetical protein	8e-1	At2g34110	-	O.I.	H.G.	S.X.
0.36	44.0	0.82	Os04g0688200	AK101245.1	-	Anionic peroxidase precursor	3e-5	At1g60140	ATTPS10 (trehalose phosphate synthase)	O.I.	H.G.	S.X.
0.35	41.7	0.84	Os04g0532100	AK109281.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e-1	At3g59710	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.33	38.8	0.78	Os04g0107600	AK058573.1	-	Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)	1e+0	At5g08139	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.33	38.8	0.84	Os03g0442900	AK099556.1	-	Conserved hypothetical protein	2e-1	At1g28610	GDSL-motif lipase, putative	O.I.	H.G.	S.X.
0.30	32.7	0.78	Os01g0327000	NM_183815.1	-	Conserved hypothetical protein	7e-7	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.80	Os07g0638500	AK108983.1	-	-	8e+0	Atmg01370	-	O.I.	H.G.	S.X.
0.29	31.1	0.85	Os04g0132500	AK121779.1	-	Protein kinase domain containing protein	5e-4	At3g24240	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.86	Os09g0300800	AK063465.1	-	Plant protein of unknown function family protein	6e-2	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.8 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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