Co-expression analysis

Gene ID	Os10g0459700
Gene name
Homology with Arabidopsis	Similar to At4g13990: exostosin family protein (HF=7e-2)
Module size	6 genes
NF	0.63
%ile	85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.87	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	0.86	Os04g0494600	AK110895.1	-	Protein of unknown function DUF642 family protein	5e-2	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.87	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.89	Os04g0467000	AK073154.1	-	Conserved hypothetical protein	2e+0	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	0.88	Os02g0183000	9630.m00818	-	Zinc-binding protein	2e-5	At2g12646	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	48.3	0.86	Os02g0454500	AK064156.1	-	Membrane bound O-acyl transferase, MBOAT familyprotein	5e-5	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
36.8	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.4	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.16559.1.S1_at, orthologous to the query gene, Os10g0459700

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.16559.1.S1_at	At4g13990	-	-	7e+0	At5g46417	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.2746.3.S1_x_at	At4g13990	-	-	8e-2	At1g47680	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	TaAffx.82031.1.S1_s_at	At4g13990	-	-	4e-3	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.16559.1.S1_x_at	At4g13990	-	-	7e+0	At5g46417	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.111101.1.S1_at	At4g13990	-	-	3e-1	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.25647.1.A1_at	At4g13990	-	-	1e+0	At2g41280	M10	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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